Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02841 ATGGCTGTGGTGGCAGTGCAGCAATTCCTGTGCTTCACAGACTTAAATTGGAGGAACATAACAAGGCCATGCATTCCCCCTCACTGTGCAATTCTTCTACGCTCACAGAAAAGGGTTAAATATTCTGTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACTCAAACTGCTGAATCTTGCGTAAATTTGGGTCTTGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTGACCCAGTTTGATACCGCACTTTCCTTGAACCCTAATCCTGTGGAGGCCCAAGCTGCGTTCTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAATCTAAAATTTGGTACAATCCTCAATGATCCCGACTTGGCCTCCTTCAGAGCTCTACCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATTGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGCGAAGTTCAAGCACCATTCCGTGGGGTTAGGAGATTCTTTTATGTGGCACTGACAGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCGAGGCTCATTCGTGCTATTAATGGTGGTGATGGTGCTCCTGATCTCTTAGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATTGTCGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATAATAGCAGGAAAAAAGGAAACAGTGTCTTCAGCTATTCAAAGAGCAGAGAGGTTTCGCACTGAGCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGCCGGGAAACAAAAATTGAGAAAAAAGGTTTTGGTCTACAGCCAAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAGTCCATAACTGCGAAATCAAAGTTGAAATCTGAAATTAGGTTCAAAGCTGAGGTTGTATCGCCAGCAGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTATCACCTGGTGAAGATGTGTACATATTACTGCGCTTGGATGGACGGGTTCGAAGATCAGGGAAAGGTATGCCTGACTGGCAGCAAATTGTGAAGGAGCTACCCCCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1314 0.449 MAVVAVQQFLCFTDLNWRNITRPCIPPHCAILLRSQKRVKYSVISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTQFDTALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISLFFTVPRLIRAINGGDGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVIIAGKKETVSSAIQRAERFRTELLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVSPGEDVYILLRLDGRVRRSGKGMPDWQQIVKELPPMEAFLSKLER 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02841 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Cca03g02841 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 40 437 - -
Cca03g02841 437 Coils Coil 432 437 - -
Cca03g02841 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Cca03g02841 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Cca03g02841 437 SUPERFAMILY TPR-like 53 124 IPR011990 GO:0005515
Cca03g02841 437 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
Cca03g02841 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Cca03g02841 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 40 437 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02841 - - gmx:100784188 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02841 03 49751358 49755911 Cca03g02841 03 49751358 49755911 ECH