Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02837 ATGTTAGAAAAGTGTTTGGGAGCTCAAAGGGCGAAAAGGTTCCAGCGAGCTCTCAGGCATTGCAAGGTCACGATCCTCTGCTTGTTCCTCACCGTCGTTGTCCTGCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAGCAGGACTTCGTCGACATCCGCAACCGCTTCTACTCCCGCAAGCTCCCCGAACCCCAACGTCTTCTCGGCGAGCTTCATTCCACAACGACGTCGGTTTCCTCCTCCGACTCTTCCACCAACAACTACAATGCCTTCGACATCAACACCATATTGCTCGACGAACCAGAAGAAGAAACAGACCGCGAGAATTTCAActatcgtctcggccccaaaatctcggattgggacgaacagagatctcgctggctccgcaagaaccctgatttcccgaattaccttcgacccaacaagcctcgtgtgcttttggtaactgggtcgtcgccgaaaccgtgtgagaatcccgttggggatcattaccTTTTGAAGTCCATTAAGAACAAAATTGATTATTGTCGTTTGCATGGGATTGAGGTTTTTTACAATATGGCCCTTCTCGACGCTGAAATGGCGGGGTTTTGGGCTAAGCTTCCTTTGATTAGGAAGCTTCTTTTGTCTCACCCTGAGGTGGAGTTTTTATGGTGGATGGATAGTGATGCCATGTTCACGGACATGGCGTTTGAGGTGCCATGGGAGAGGTACAAGGAGTATAACTTGGTGATGCATGGGTGGGATGAGATGGTTTATGATGACAAGAATTGGATTGGGTTGAACACTGGGAGTTTTCTGTTGAGGAACTGTCAGTGGTCGTTGGATATTCTTGATGCTTGGGCTCCAATGGGGCCCAAGGGTAGGGTTAGGGATGAGGCTGGGAAAGTGCTCACGCGTGAGCTCAAGGATAGGCCTGTTTTTGAAGCTGATGATCAATCTGCCATGGTTTATTTGCTGGCTAAGGAGAAGGAAAAGTGGGGTGGGAAGGTTTATCTTGAGAATGGTTATTACTTGCATGGCTATTGGGGGATTTTGGTTGATAGGTACGAGGAGATGATTGAGAATTATCGTCCTGGTTTTGGTGACCATAGGTGGCCCTTGGTGACTCATTTCGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAGCAGATGGATAGGGCTTTCAATTTTGGGGATAATCAGATTCTGCAGATTTATGGGTTTACGCATAAGTCGTTGGGTAGTAGGGGAGTTAAGAGAATACGGGATGAGACTAGCAACCCTCTTGAGGTCAAAGACGAATTTGGGTTGCTTCATCCATCATTCAAAGCAGTCAAGCCTCTCTCTCTCGGTCTTAAGTTTCTCAACTAA 1386 0.4264 MLEKCLGAQRAKRFQRALRHCKVTILCLFLTVVVLRGTIGAGKFGTPEQDFVDIRNRFYSRKLPEPQRLLGELHSTTTSVSSSDSSTNNYNAFDINTILLDEPEEETDRENFNYRLGPKISDWDEQRSRWLRKNPDFPNYLRPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKEYNLVMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGRVRDEAGKVLTRELKDRPVFEADDQSAMVYLLAKEKEKWGGKVYLENGYYLHGYWGILVDRYEEMIENYRPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLGSRGVKRIRDETSNPLEVKDEFGLLHPSFKAVKPLSLGLKFLN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02837 461 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 144 294 IPR029044 -
Cca03g02837 461 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 4 451 IPR008630 GO:0016021|GO:0016757
Cca03g02837 461 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE-RELATED 4 451 - -
Cca03g02837 461 Pfam galactosyl transferase GMA12/MNN10 family 145 384 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02837 Cca-Chr3 49733299 49734837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02837 1 451 Glycosyltransferase AT3G62720 79.515 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02837 K08238 - gmx:100794266 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02837 03 49733299 49734837 Cca03g02837 03 49733299 49734837 ECH