Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02835 ATGCTTCCTCTCTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATCTGTACCTCTAAAGACGGAGATAGGTTTTGGAGGATGCCTGAGTGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGGTAATTGACAAAGTTCAGGAAGAAACCAAGACCCGTGCAGATCGCAAACCACCTGGTGTGGGGCGTGGAAGGGGAAGAGGCAGAGAGGAAGGTCCTGGAGGACGAGGACCAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTGCTAAGGGAGCTGGAGGAGGCCGAGGCAGGGGTGGCCCGGGTGGAAAGCCTGGTGGAGGCAGAGGGCGAGGTAGAGGCTGA 447 0.5302 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREEGPGGRGPKGIGRGLDDGGAKGAGGGRGRGGPGGKPGGGRGRGRG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02835 148 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 137 IPR027141 GO:0006396
Cca03g02835 148 Gene3D - 1 83 - -
Cca03g02835 148 PANTHER SM-LIKE PROTEIN LSM4 1 137 - -
Cca03g02835 148 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Cca03g02835 148 MobiDBLite consensus disorder prediction 80 109 - -
Cca03g02835 148 Pfam LSM domain 6 70 IPR001163 -
Cca03g02835 148 MobiDBLite consensus disorder prediction 80 148 - -
Cca03g02835 148 SMART Sm3 5 71 IPR001163 -
Cca03g02835 148 SUPERFAMILY Sm-like ribonucleoproteins 3 128 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02835 Cca-Chr3 49718933 49721385 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02835 K12623 - sind:105168921 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02835 03 49718933 49721385 Cca03g02835 03 49718933 49721385 ECH