Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02834 ATGGATGTCGAGGAGCAACCTTCGCCCAACCCCACTAACGTTAAATGCTTCGGCCTCAAAAATTCGATTCAAACTAACTTCGGTGATGACTATGTTTTCCAAATTGTCCCAAAGGATGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACGCGGTGAAACTGTATTCGCCTGTGGCGGGTCAATATTATGGAGAGTGCAAGGGTCACTCTGCAACCATCAATCAGATTTCTTTTTCGGGTCCTTCAAATCCCCATGTTTTGTGTTCGTGTTCTTCTGATGGCACTATTAGAGCTTGGGACACACGGACATTTCAGCAGGTTTCTTCCATCATTGCTGGTTCTTCTCAGGAGGTTTTCAGCTTCTGTCTTGGAGGGACTAGTGGAAATTTAGTTGCCGCCGGGTGTAAATCGCAGATACTGTTCTGGGATTGGAGAAATATGAAGCAAATTGCATGCCTGGAGGACTCTCATGTTGATGATGTCACTCAGGTTCATTTTGTCCCTAATGACCAAGGCAAGCTTATTTCTGCTTCAGAAGATGGGTTGATCTGTACATTTGATACTGCCGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAATTACCAGAAGCTTTGGTGTTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGAAATGAAGGAAACTTCTCAGATGCTCGTACTTTAGCTTCAGAAAGTTGGAATTTGGATCACGTGAGTTCCTCCTAA 795 0.4365 MDVEEQPSPNPTNVKCFGLKNSIQTNFGDDYVFQIVPKDDWSAMAVSLSTNAVKLYSPVAGQYYGECKGHSATINQISFSGPSNPHVLCSCSSDGTIRAWDTRTFQQVSSIIAGSSQEVFSFCLGGTSGNLVAAGCKSQILFWDWRNMKQIACLEDSHVDDVTQVHFVPNDQGKLISASEDGLICTFDTAGDINDDDHLESVINMGTSIAKVGIFGENYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTLASESWNLDHVSSS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02834 264 SUPERFAMILY WD40 repeat-like 32 245 IPR036322 GO:0005515
Cca03g02834 264 PANTHER UNCHARACTERIZED 16 259 IPR039328 -
Cca03g02834 264 ProSitePatterns Trp-Asp (WD) repeats signature. 88 102 IPR019775 -
Cca03g02834 264 Pfam WD domain, G-beta repeat 64 101 IPR001680 GO:0005515
Cca03g02834 264 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 67 104 - -
Cca03g02834 264 Gene3D - 12 212 IPR015943 GO:0005515
Cca03g02834 264 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 110 IPR001680 GO:0005515
Cca03g02834 264 SMART WD40_4 147 188 IPR001680 GO:0005515
Cca03g02834 264 SMART WD40_4 60 101 IPR001680 GO:0005515
Cca03g02834 264 SMART WD40_4 104 144 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02834 K24758 - gmx:100794786 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02834 03 49714956 49717604 Cca03g02834 03 49714956 49717604 ECH