Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02821 ATGATCTCCTCCAAGCCTCCGCGCCGGAAAGTCGTTCCGGCGAACGGCGATGACTCCGCCGACAAGCTTGATCAGCTCCTCCTCTCCTCCGCCATCTGCAATAACGAGGACCTCGGCCCCTTCATCCGCAAGGCCTTCGCCTCCGGCAAGCCGGAGACGCTCCACCACCACCTCCGCCACTTCGCGCGGTCAAAAGAGTCGGAGATCGAAGAAGTGTGCAAGGCGCACTACCAGGACTTCATCCTCGCCGTCGACGACCTCCGATCGCTCCTCTCCGACGTCGATTCGCTCAAGTCCTCCCTCTCCGACTCCAACTCCAAGCTCCAGTCTGTGGCGCGCCCTCTCCTCTCGTCGCTCGACGCCTTCGTTGAAACGCGCAACGTCTCAAAGAACGTGAACCTCGCCATCGACTCGGTCCGCGCATGCGTCAAGCTCATGGAAGTTTGCTCGCGCGCCAACCGCCACCTCGCTGACGACAACTTCTACATGGCGCTCAAGTGCGTGGACGCGATCGAGCGCGAGTACTTGGACCAAACGGCGTCGTCCACGCTGAAGCGGATGCTGGAGAAGAAGATTCCGGAGATTCGCTCCTACATCGAGAGGAAGGTGAACAAGGAGTTCGGTGACTGGTTGGTGGAGATCCGAGTAGTGAGTCGCAATTTAGGTCAATTGGCGATAGGTCAAGCCTCGTCAGCGAGGCAGAGAGAAGAGGATCTGAGAAGCAAGCAGCGCCAAGCGGAGGAACAGAGTAGGCTCAGCGTGAGGGACTGCATTTATGCGTTGGAAGAAGAGGACGAAGACGGAGTCATTGCCGGCGGGATCGGAGAAGACGCCGGTGGTGTCGCCGGTTTTGATTTGACTCCGTTGTATAGGGCTTACCATATTCATCAGACGTTAGGGTTAGAGGATCGGTTTAAGCAGTATTATTTTGAGAACCGGAAGCTTCAGTTGACCTCGGACTTTCAGGTCTCGTCGATGACTCCTTTTCTCGAGTCGCATCAAACGTTCTTTGCGCAGATTGCGGGGTTCTTTGTGGTGGAGGATCGCGTGTTGAGGACTGGGGGTGGGTTGATATCGAAGATGGAGGTTGAGAATCTGTGGGAGATTGCTGTTAGTAAAATGTGTTCTGTTTTGGAGGATCAGTTCTCCAGAATGCAAACTGCTAATCATCTTTTGCTGATTAAGGACTATGTGAGTCTGTTGGGAGTAACCCTAAGGAGATATGGGTACCCCATTGATGCATTGCTCGATGTTTTGAGCAAGCATAGGGATAAGTACCACGAGCTGCTTTTGTCCGACTGTAAGAAGCAGATTGCGGAGGCCGTTTCATCTGAAAAATTTGAGCAGATGTTGATGAAGAAAGAGTATGAGTATTCCATGAATGTGCTTTCTTTCCAAATACAAACATCGGATATCATCCCTGCTTTTCCCTACCTGGCACCGTTTTCATCCACCGTGCCGGATTGTTGTAGGATTGTGCGGTCCTTCATCGAGGATTCTGTAAGTTTCATGTCATATGGTGGGCAGCTTGAGTTCTATGATGTTGTTAAGAAATATTTAGACAGGCTTTTGAGTGAGGTTTTGGACGAAGCTTTAGTGAAGCTTATCAATACGTCGATTAGTGGTGTCTCCCAGGCAATGCAAATGGCAGCAAATATGGCTGTCATGGAGCGTGCTTGTGATTTTTTCTTTCGCCAAGCTGCACAGCTTTCGGGTGTTCCCTTGAGAATGGTGGAGAGAAGCAGAAGACAGTTCCCTCTAAGAAAAGCCCGTGATGTTGCGGAAGAGATGCTCTCTGGGCTACTCAAAGCCAAAGTTGATGGATTTATGTCCTTGATCGAGAATGTAAATTGGATGTGTGATGAGGCACCTCAGAGTGGAAATGAATATGTAAATGAAGTCATAATTTATTTGGAAATTTTGGTTTCAACTGCTCAACAGATATTGCCATCTCAAGTCCTTAAGAGAGTTTTACAGGAAGTTTTTGCTCACATATCAGAGAAGATAGTTGGGACTTTAGTTAGTGATTCCGTTAAGAGGTTTAATGTGAATGCTATTAATGGAATTGAAGTAGACATCCGGCTCTTGGAATCATTTGCTGATAATCAGGCTTCCCTTTTCTCTGATGGGGATGTTGATGTTCTGAAGTCATCACTTGCCAGCTCAAAGCAACTGATTAATTTGCTATTAAGCAATCATCCGGAGAACTTCTTGAATCCAGTGATCAGGGAGAGGAGTTACAATACTTTGGACCACAAGAAAGTGGTGATTGTTTCAGAGAAGTTGAGGGATCCTTCCGATCGGCTCTTTGGAACCTTTGGTAGTCGTGGGGCCAGGCAGAATCCAAAAAGGAAATCATTGGATACATTGATAAAAAGACTTAAGGATGTTAGCTGA 2397 0.4881 MISSKPPRRKVVPANGDDSADKLDQLLLSSAICNNEDLGPFIRKAFASGKPETLHHHLRHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSSLSDSNSKLQSVARPLLSSLDAFVETRNVSKNVNLAIDSVRACVKLMEVCSRANRHLADDNFYMALKCVDAIEREYLDQTASSTLKRMLEKKIPEIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRSKQRQAEEQSRLSVRDCIYALEEEDEDGVIAGGIGEDAGGVAGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFVVEDRVLRTGGGLISKMEVENLWEIAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCKKQIAEAVSSEKFEQMLMKKEYEYSMNVLSFQIQTSDIIPAFPYLAPFSSTVPDCCRIVRSFIEDSVSFMSYGGQLEFYDVVKKYLDRLLSEVLDEALVKLINTSISGVSQAMQMAANMAVMERACDFFFRQAAQLSGVPLRMVERSRRQFPLRKARDVAEEMLSGLLKAKVDGFMSLIENVNWMCDEAPQSGNEYVNEVIIYLEILVSTAQQILPSQVLKRVLQEVFAHISEKIVGTLVSDSVKRFNVNAINGIEVDIRLLESFADNQASLFSDGDVDVLKSSLASSKQLINLLLSNHPENFLNPVIRERSYNTLDHKKVVIVSEKLRDPSDRLFGTFGSRGARQNPKRKSLDTLIKRLKDVS 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02821 798 PANTHER EXOCYST COMPLEX COMPONENT SEC15B 7 798 - -
Cca03g02821 798 Pfam Exocyst complex subunit Sec15-like 458 762 IPR046361 -
Cca03g02821 798 PIRSF Sec15 5 798 IPR007225 GO:0006886|GO:0090522
Cca03g02821 798 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 590 737 IPR042044 -
Cca03g02821 798 Coils Coil 229 249 - -
Cca03g02821 798 Gene3D - 412 583 IPR042045 -
Cca03g02821 798 PANTHER SEC15 7 798 IPR007225 GO:0006886|GO:0090522
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02821 Cca-Chr3 49558907 49561679 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02821 K19985 - gmx:100796432 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02821 03 49558907 49561679 Cca03g02821 03 49558907 49561679 ECH