Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02816 ATGGAAGACATGAGAAAAGTCTTCTCGGGGTTGGTTCTCTGTGTGATTGTATTGGCATACCAGACAAGCGCACAAGAAACAAAAGGAAAGAACCTAATCAAGAAGGTATGCACAATGGTTCCAAATAGAGACCTATGTGTGAATGTCCTATCATCAGACCCGGAGCAAAGCCCTAACGCAGACCTCAAAGACTTGGCAATCATATCCCTTAGGGTTGCTGCCAATAACGCATCTGGGATCCTGGAAGATACAAAAATGCTCATCGATGACGACAACCTTGACCCAGACGTTCAACAAGGTTTGGCTGATTGCAAGGAGACAATCTCAGATGCAGAGAGCCAACTGGAGGACAGCATTGCTGCCTTGTTGGTTGATTCTAACTCTGATGCCCAAATTTGGCTCAAAGCTGCTTTGGCTGCAATCGACACTTGCGATGCTTCCATCCCTGGAGATGATGACATTCTCTCCGTTAAAAGCGTTGTCTTCCGCAAGTTGTGCAACATCGCCATTGCCATTAATGGTCTCTTGAACAAACCTAGCTTACCCTTTAAAGTATAA 558 0.4534 MEDMRKVFSGLVLCVIVLAYQTSAQETKGKNLIKKVCTMVPNRDLCVNVLSSDPEQSPNADLKDLAIISLRVAANNASGILEDTKMLIDDDNLDPDVQQGLADCKETISDAESQLEDSIAALLVDSNSDAQIWLKAALAAIDTCDASIPGDDDILSVKSVVFRKLCNIAIAINGLLNKPSLPFKV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02816 185 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Cca03g02816 185 PANTHER PECTINESTERASE 2 168 - -
Cca03g02816 185 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Cca03g02816 185 SMART PMEI_2 28 172 IPR006501 GO:0004857
Cca03g02816 185 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 2 168 - -
Cca03g02816 185 Pfam Plant invertase/pectin methylesterase inhibitor 31 172 IPR006501 GO:0004857
Cca03g02816 185 Coils Coil 101 121 - -
Cca03g02816 185 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02816 Cca-Chr3 49503780 49504650 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02816 - - gmx:102667060 280.026