Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02813 ATGGAACACATCACAAAATTCTTCTTGGCTATGGTTCTTTGCGCAACAGCATTGGCACACCAGACATATGCACAAGAAACAAAAGGAAAGGAGCTAATCAATAAGGTATGCACAATCTCCCCAAATAGGGACCTTTGTGTGAATGTTCTATCATCAGACCCAAACCGAAGTCCTGATGCAGACCTCAAAGATTTGGCAATCATATCCCTCAGGGTTGCTGCCAAAAACGCATCTGGCATGCTTACCGATGCAAAAAGGCTCATCAATGACGCCAGCCTTAACCCTAACATTCAACAAGGTTTGGCTGATTGCAAAGAAACCATCTTGGATGCAGAAAGCCAGCTGGAGGACACCATTGCTGCCTTGTTGGTTAATTCTAACACTGACGCTCAAGTTTGGCTTAAGGCTGCTTTAGCTGCAATCGACACTTGCGATGCCTCTATTCCCGGAGATGACGACATTCTCTCCGTTAAAAGCACTGTTCTTCGTAAGCTGTGCAACATTGCCATTTCCATTAATGGTCTCATGAACAAACCTGATTTCTTCAACCAACCTAACCTTTTGAACAAACCCTAA 576 0.441 MEHITKFFLAMVLCATALAHQTYAQETKGKELINKVCTISPNRDLCVNVLSSDPNRSPDADLKDLAIISLRVAAKNASGMLTDAKRLINDASLNPNIQQGLADCKETILDAESQLEDTIAALLVNSNTDAQVWLKAALAAIDTCDASIPGDDDILSVKSTVLRKLCNIAISINGLMNKPDFFNQPNLLNKP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02813 191 PANTHER PECTINESTERASE 1 168 - -
Cca03g02813 191 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 174 IPR006501 GO:0004857
Cca03g02813 191 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Cca03g02813 191 Pfam Plant invertase/pectin methylesterase inhibitor 32 172 IPR006501 GO:0004857
Cca03g02813 191 SMART PMEI_2 28 172 IPR006501 GO:0004857
Cca03g02813 191 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 176 IPR035513 -
Cca03g02813 191 CDD PMEI-like_1 32 176 - -
Cca03g02813 191 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02813 Cca-Chr3 49489812 49490529 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02813 - - gmx:102667060 270.011