Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02807 ATGTCTACGCAACCAAAGCTTGGTCGGCTTCCCAGTATCAGAGACAGAGTTGAGGATACTCTCTCTGCTCACCGTAACGAACTCATTTCTCTCCTTTCCAGGTATGTGGATCAAGGGAAAGGGATTTTGCAACCCCATAATTTGATTGATGAGCTTGACAACATCCCTGGTGAGGATGAATCAAAACAGGATCTTAAAAATGGACCCTTTGGTGATATTATCAAGGCTGCACAGGAAGCCATAGTTTTGCCTCCTTTTGTGGCAATAGCAGTTCGTCCAAGACCTGGTGTTTGGGAATATGTCCGTGTTAATGTCTCTGAACTCAGCGTGGAGCAATTATGTGTTTCTGAATATCTCAGCTTCAAGGAAGAACTTGTAGATGGAAAGACTAATGACAATTTTGTATTGGAGCTTGATTTTGAGCCATTTAATGCCACATTTCCCCGTCCATCCCGCTCATCATCCATTGGCAATGGTGTCCAATTTCTCAATCGCCACCTTTCATCAATCATGTTTCGCAACAAAGATTCCTTGGAGCCCTTGCTTGATTTCCTCCGAGCTCACAAATACAGAGGCCATGCACTGATGTTAAATGATAGAATACTAAACATTTCCAAACTTCAGTCTGCTTTGGCCAAGGCTGAGGATTATCTTTCCAAACTTCCACGTGATACACTGTATTCAGAGTTTGAATATGTATTGCAAGGAATGGGTTTTGAGAGAGGTTGGGGTGATACTGCTGAACGGGTATTGGAAATGATGCATCTGCTACTAGATATTCTTCAGGCTCCTGATCCTTCTACACTTGAGACTTTTCTTGGGAGAATACCAATGGTGTTCAATGTTGTTATATTATCTCCTCATGGATACTTTGGACAAGCCAATGTATTGGGTTTGCCCGACACTGGTGGGCAGGTTGTTTATATACTAGATCAAGTGCGTGCCCTTGAAAATGAGATGCTTCTTCGGATCAAGAAACAAGGACTTGATTTCACTCCTAGAATTCTAATTGTTACCAGGTTAATACCTGATGCAAAAGGGACAACATGCAACCAGCGGCTAGAAAGAGTCAGTGGTACTGACCACACTCATATTTTGCGAGTTCCATTCAGATCAGAGACAGGAACTCTCCGTAAATGGATCTCAAGGTTTGATGTGTGGCCATATCTAGAGACTTATGCTGAGGATGTTGCCAGTGAAATTGCTGCTGAGTTACAAGGTTATCCTGATTTCATCATTGGAAACTACAGTGATGGAAATCTTGTTGCATCTTTATTAGCTTATAAAATGGGAGTTACACAGTGCACCATTGCCCATGCACTTGAGAAGACGAAATATCCAGATTCAGATCTATACTGGAAGAAATTTGAGGATAAATACCATTTTTCATGCCAGTTCACTGCTGACCTAATAGCCATGAATAATGCTGATTTTATCATCACCAGTACTTACCAAGAGATTGCAGGAACGAAAAATACTGTTGGGCAGTATGAGAGCCACACTGGTTTTACTCTTCCTGGACTCTATAGGGTTGTCCATGGCATTGATGTTTTTGATCCCAAGTTCAATATTGTCTCTCCTGGAGCAGATATGTCAATTTATTTCCCCTACTCTGAAAAGCAGAACAGGCTTACAGCCTTGCATGGTTCAATTGAACAGCTATTATATGATACCACCCAGACTGATGATTACATTGGTACACTGAATGACAAGTCAAAGCCCATAATTTTCTCCATGGCAAGGCTAGACAGAGTTAAAAACATATCTGGATTAGTAGAATGCTATGGTAAGAACGCCAAGTTGAGGGAACTGGTCAACCTTGTTGTAGTAGCTGGTTATATTGATGTAAATAAGTCCAGCGACAGAGAAGAAATCTCAGAAATTGAGAAGATGCATGATCTTGTGAAGAAGTACAATTTAGATGGTGATTTTCGTTGGATCGCTGCCCAAACAAATAGGGCACGTAACGGGGAGCTGTATCGATACATAGCAGATACACAAGGTGCTTTCATTCAGCCTGCTTTTTATGAAGCTTTTGGACTCACAGTTGTGGAGGCCATGACTTGTGGACTCCCCACATTTGCTACTTGCCATGGTGGTCCTGCCGAGATCATTGAGCATGGCATATCAGGATTCCACATTGATCCTTATCACCCTGATCAAGCTTCAGAGCTATTGGTTGAATTCTTCCAAAACTGCAAGGAGGATCCAGACCATTGGAAGAAAATATCTGATGGTGGTCTTCAAAGAATTTATGAAAGGTACACATGGAAGATTTATTCCGAAAGGCTTATGACCTTGGCGGGAGTTTATAGCTTCTGGAAATATGTTTCCAAGTTAGAGAGGCGTGAAACTCGACGATATCTCGAGATGTTCTATATCCTAAAGTTCCGCGATTTGGCAAATTCTGTTCCGCTAGCAAAGGATGATGCAAGTTAA 2439 0.4178 MSTQPKLGRLPSIRDRVEDTLSAHRNELISLLSRYVDQGKGILQPHNLIDELDNIPGEDESKQDLKNGPFGDIIKAAQEAIVLPPFVAIAVRPRPGVWEYVRVNVSELSVEQLCVSEYLSFKEELVDGKTNDNFVLELDFEPFNATFPRPSRSSSIGNGVQFLNRHLSSIMFRNKDSLEPLLDFLRAHKYRGHALMLNDRILNISKLQSALAKAEDYLSKLPRDTLYSEFEYVLQGMGFERGWGDTAERVLEMMHLLLDILQAPDPSTLETFLGRIPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKKQGLDFTPRILIVTRLIPDAKGTTCNQRLERVSGTDHTHILRVPFRSETGTLRKWISRFDVWPYLETYAEDVASEIAAELQGYPDFIIGNYSDGNLVASLLAYKMGVTQCTIAHALEKTKYPDSDLYWKKFEDKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTGFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYSEKQNRLTALHGSIEQLLYDTTQTDDYIGTLNDKSKPIIFSMARLDRVKNISGLVECYGKNAKLRELVNLVVVAGYIDVNKSSDREEISEIEKMHDLVKKYNLDGDFRWIAAQTNRARNGELYRYIADTQGAFIQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGISGFHIDPYHPDQASELLVEFFQNCKEDPDHWKKISDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPLAKDDAS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02807 812 Gene3D Glycogen Phosphorylase B; 530 757 - -
Cca03g02807 812 Gene3D - 149 278 - -
Cca03g02807 812 Gene3D - 26 148 - -
Cca03g02807 812 Gene3D Glycogen Phosphorylase B; 283 800 - -
Cca03g02807 812 Pfam Glycosyl transferases group 1 568 742 IPR001296 GO:0016757
Cca03g02807 812 CDD GT4_sucrose_synthase 281 766 - -
Cca03g02807 812 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 298 766 - -
Cca03g02807 812 PANTHER - 1 812 IPR012820 GO:0005985|GO:0016157
Cca03g02807 812 Pfam Sucrose synthase 9 556 IPR000368 GO:0005985|GO:0016157
Cca03g02807 812 PANTHER SUCROSE SYNTHASE 1 812 - -
Cca03g02807 812 TIGRFAM sucr_synth: sucrose synthase 25 806 IPR012820 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02807 Cca-Chr3 49428860 49434689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02807 3 810 Glycosyltransferase AT4G02280 83.292 0.0 1436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02807 K00695 - gmx:100793371 1557.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02807 03 49428860 49434689 Cca03g02807 03 49428860 49434689 ECH