Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02806 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCGTGCAAGTTGTGGAGAGGGGATGGAAGCGGAAGATTCGACTGTAGTCTTCTATCGTGCGCGTGGAAAGCTCCGAGGGTTCTCACCGGGTTTCTCGCGAGCACTGCTCATTCTCATCAGTGTTCGGACCGAAGAAGGAACCGGTATAATTTTGGATGTGAAGCTAGTGTAGGTGGCTCGTATCCTGATGAAGCACTTGATATCATACTTTTTGAAGGATCCTCTAAATCTATCTTGTCTCGAGTTGCTCCTAAAAGATGGCAATTATGTTGTTCTTCAACCTTCTCTGTGGACACTGCCACTGAGTTTTCTGCAGAAAGTTTGTGGGAGGGTCTTAAACCTGCGATCTCGTACCTATCTCCTAAAGAACTGGAGTTAGTTTACAATGCTTTTACGTTGGCATTTAAAGCTCATGATGGTCAGAAAAGACGTAGTGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCACGTATTTTGGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGTCACATTGTGGAAGGAGAGACCAAGGTGTCAAAATTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTCCAAGATGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCTATGACAGAAGAGGTTCGAGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCCTTGGCAAAGTTGCTTGGAATGTATCAAATTAAGTCAGAACTAGAAAACCTATCATTTATGTACACAAACCCAGAAGATTTTGCTAAGGTGAAGAGAAGAGTTGCTGAGTTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATATTGATGAAGAAAATCCAAGAAGATCAATTCTTAGACCTTCTAACTGTTAAAACGGAAGTTCGTGCTGTATGTAAAGAGCCTTACAGTATTTATAAAGCTGTTCTCAAATCAAAGAGTTCAATCAGTGAGATTAACCAAATTGCTCAGCTTCGTATTATTATTAAACCAAAGCAATGCATTGGGGTTGGGCCTTTATGCAATCCACAACAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAAAGTCTTCACACCACTGTGATTCCATTTTTGTACGAGAGTATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTTACAGGCTTGGTTGGAAGTGCGACCCCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTTAACAACGCCAATATTGCACTGAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGCTCTAGGGAATTTGTGGACACTATTACAAGAGATCTGCTGGGCAGCCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTATATGATCCACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCCCCTGCTCATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCTGCTTTTCAGAGGCATAAGCAGTGGTTACAACATGCTAAAACACGCAGCGCAAGACACAAAATAATGAAGTTTTTGAGGGAGCAAGCTGCACGCTCTGCTGCTGATATCACTACGGAAGCAGTCAATGACTTTGTCACTGATTCTGATGGAGATAGTGAATCTGAAGAACTATCAAAAGGATCCAGTGGTTCCAAATATACGTGGGGTAAAATGTCTGTGAATGGAGTGGAAATTTCAACTTCTGGAAGAAGTGAGGCTGTCCACCAAAGTAAGAATGGAAGTGTTTGGATCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAATGGCAAAGGGGAAATGTTACTGCAGGGAAATATTGTGGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTTCCAGGTTTGGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGATCGAAGAGGCATGATGGCTGAGGTTACTACAGCATTGGCCACTGCAGGCATAGCCATACGCTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTCATGGTATTTCACGTAGAAGGAAATTTAGAAAATTTGGTACTGCCATGTCTGAAAACGCTATTGATAGTCTAG 2565 0.4226 MASASSMSVSLECVNACKLWRGDGSGRFDCSLLSCAWKAPRVLTGFLASTAHSHQCSDRRRNRYNFGCEASVGGSYPDEALDIILFEGSSKSILSRVAPKRWQLCCSSTFSVDTATEFSAESLWEGLKPAISYLSPKELELVYNAFTLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNPEDFAKVKRRVAELYKEHEKELLEANKILMKKIQEDQFLDLLTVKTEVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIIIKPKQCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSDGDSESEELSKGSSGSKYTWGKMSVNGVEISTSGRSEAVHQSKNGSVWIPKVNGKHNKHVQHESFNGKGEMLLQGNIVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTALATAGIAIRSCVAEIDGGRGMAVMVFHVEGNLENLVLPCLKTLLIV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02806 854 ProSiteProfiles TGS domain profile. 554 617 IPR004095 -
Cca03g02806 854 SMART hd_13 160 280 IPR003607 -
Cca03g02806 854 SUPERFAMILY Nucleotidyltransferase 319 491 IPR043519 -
Cca03g02806 854 Pfam Region found in RelA / SpoT proteins 371 487 IPR007685 GO:0015969
Cca03g02806 854 CDD NT_Rel-Spo_like 361 481 IPR007685 GO:0015969
Cca03g02806 854 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 849 - -
Cca03g02806 854 SUPERFAMILY TGS-like 545 617 IPR012676 -
Cca03g02806 854 Gene3D Beta Polymerase, domain 2 319 473 IPR043519 -
Cca03g02806 854 CDD HDc 162 293 IPR003607 -
Cca03g02806 854 Gene3D - 790 850 - -
Cca03g02806 854 SUPERFAMILY HD-domain/PDEase-like 129 317 - -
Cca03g02806 854 Gene3D - 551 626 IPR012675 -
Cca03g02806 854 Pfam TGS domain 558 617 IPR004095 -
Cca03g02806 854 ProSiteProfiles HD domain profile. 164 271 IPR006674 -
Cca03g02806 854 Coils Coil 333 353 - -
Cca03g02806 854 CDD TGS_RSH 559 617 IPR033655 -
Cca03g02806 854 Pfam HD domain 145 302 - -
Cca03g02806 854 ProSiteProfiles ACT domain profile. 790 854 IPR002912 -
Cca03g02806 854 SMART RelA_SpoT_2 371 493 IPR007685 GO:0015969
Cca03g02806 854 SUPERFAMILY ACT-like 790 840 IPR045865 -
Cca03g02806 854 MobiDBLite consensus disorder prediction 669 689 - -
Cca03g02806 854 Gene3D Hypothetical protein af1432 119 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02806 Cca-Chr3 49389624 49397302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02806 174 489 EF-hand Containing Proteins AT3G17470 30.061 1.89e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02806 K00951 - gmx:100786637 1552.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02806 03 49389624 49397302 Cca03g02806 03 49389624 49397302 ECH