LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g02778	ATGTCCTCTTCGCGTCGCAACACCAACGGTCGATCACCGCTCGTCAATCAGCAGCGTCAAATCACTTCCTTCTTCACCAAATCCGCTTCTCCTTCTCCCTCTCCCACCCTCTCCAAAACCACCCAAAAACCTAACCCTAACCCTAACCCTACCCCTCTCAATGCCAAACACAAGCCTCTTCTTCTCATCGGCGCTTCCGCTTCTCCGCCCTCATCTTCTCTCTACGGCCAAGAAGTTGTTGGCCGAAGGATCAAGGTTTATTGGCCATTGGACAATGCCTGGTACGAAGGTTCCGTCAAATCCTTCGACAGCCTCACCTCCAAGCACCTCGTTCGTTACGACGACGACGAAGAGGAATCGCTCGACCTCTCCAAGGAGAAGGTCCACTTGCTTCAGGATTCCTCTTCCAAGAAACTTAAACGCCTGCGTCGCGGCGTCCCCGTCGTTAGgaagatggtgattgacgacggcgaagaagaagagggtaatgatgctgctgatggtgatgattccgatgatgaagattgggggaataatgctgcattggaggatgctggggacggtgatgaagatACGGACTTAGAGGAGGAAGGGGATGAAGCAGAGATGGCTAAAGGGAAACCTGGTGGGAAGGTTGAGGGTAGAAAGCGGAAGCTAAGTGGAACGGTGAAACAAGAGTCTGCGAAAAAGAGCAAGAGTGGAGTGGAAGTTGGCAAGGGAGCTTTTAAGTTCTCTGTGTCGGAACCTACGAGTAATTTGGAGAATAAAAATACGTCTAACGGTGCTGATAATGTTGTGACTGCCGAGGCTTCTGAAAGATTTGCATCTCGTGAAGCTGAGAAATTGCGCTTCCTGAAAGTAGATCGCAGGGATGCCAAGCGAAGACGGCCGGGAGATGATAATTATGATTCAAAAACTCTTTACTTGCCTCCTGATTTCTTAAAGAATTTGTCGGATGGGCAGAAACAGTGGTGGGATTTCAAGTCAAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACATGTAGGCGTGAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAATTTCTCGATGCATGTGGAGAAACTGGCCAGGAAGGGTTATAGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGCAAGGAAAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAAATATGTGCAGTGGTTACAAAAGGTACATTAACGGATGGGGAGCTGCTGTCTTCAAACCCTGAAGCTGCTTATTTAATGGCCCTGACCGAGCATCACGAAAATAATCCAAATGAAATTTCAGAGCATATCTATGGTGTTTGTATAGTTGATGTTGCCACAAGTAGGGTTATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGCTTTGTGCTGTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACGGAGAGAGTACTGCAGAAGCATACCAGAAATCCTTTAGTGAATGAATTAGTCCCAATTGTGGAATTCTGGGATGCTGACAAAACAGTGGATCAATTGAAGAAAATTTATGGGAATACTAATGATGTTAGTGTTGAAGATAGTGGCCTGCCAGATGTTTTACTGGAGCTGGTGAAGACAGGTGATGACAATAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAAACAGGCTTTTCTAGATGAGAGATTGCTTAGATTTGCACAGTTTGAGTTACTTCCATGTTCTGGTTTTGGTGACTTTGCTTCAAAACCCTACATGGTTCTTGATGCGGCTGCCCTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAATGGAGATTCTTCGGGCACACTCTATGCCCAACTAAACCAATGCGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCATTATGTCATGTGGAGTCAATTAAGGAACGCCAAGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTCTGCACTAGAATTTCGAAAAGCATTATCCAAGCTACCTGACATGGAGCGGTTGCTTGCACGCATCTTTTCCTCTAGTGAAGCTAGTGGAAGAAATGCTAACAAAGTGGTTCTGTATGAGGATGCATCCAAGAAGCAACTGCAAGAGTTTATTTCAGCTCTGCGTGGTTGTGAACAGATGGAACAAGCGTGCTCTTCACTTGGTGTCATTTTGAATCATGTCAAATCCAGACAACTTCATAATCTGTTAACACCAGGTAAAGGTCTTCCTGATGTCTGTATGGATCTCAATCATTTCAAGGATGCCTTCGATTGGGTGGAAGCCAATAACTCTGGGCGTATAATACCTCGTGAAGGAGTTGACACAGAGTATGACTCGGCCTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTCAAGGAACAAAGGAAAATACTTGGAGATACATCAATTACTTATGTCAGTGTTGGAAAGGATTCATACCTATTGGAAGTGCCAGAAAATTTGAGTAGGAATATTCCTCGGGATTATGAACTGCGTTCATCCAGGAAAGGCTTTTTTAGGTACTGGTCTCCAGATATTAAATTGTTTTTGAGACAGCTCTCCCGAGCTGAATCTGAAAAGGAGTCCTTGCTTAAAAGTACACTTCAGAGATTAATATCGCGTTTTTGTGAACATCACACTAAGTGGAAGCAGTTGGTGTCCACAACTGCAGAACTGGATGTCTTGATCAGTTTAGCTATTGCTGGTGACTACTATGAAGGACCAACATGCAGACCTAATTTCATAGGCACATTATGCACAAAAGAAGCTCCTTACCTCCATGCTAAAAATTTGGGACACCCAGTCCTTAGGAGTGATACCTTAGGCAAGAGTGCCTTTGTACCCAATGACATAACCATTGGTGGTCCAGATCATGCTAGCTTTATTCTTCTAACTGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAAGTTTGCTTGACTGTAATTTTGGCCCAGGTAGGAGCTAATGTCCCAGCAGAAAGTTTTGATTTGTCACCTATTGACCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCACCAATGCTGTCATCAGCCACACGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGGCAAGCCATTGCGGAATCCGTATTAGAACATCTTGTGCGAAAGGTGCAATGTCGGGGATTGTTTTCTACACACTATCATCGATTAGCTGTAGATTATCTCAAAGATCCCAAGGTCAGTCTCTGCCACATGGCATGCCAAGTTGGTACTGGAATTGCAGGTTTGGACGAAGTCACCTTTCTTTACAGGCTTACCCCTGGTGCTTGTCCCAATAGCTATGGTGTTAATGTTGCTCGGATAGCTGGGCTTCCATCTTCCGTGCTTCAGAAGGCTGCTGCAAAGTCCAGAGAATTTGAGGCCACTTATGGTAAATGCAGAAAGGAAGCCATTTGCGTCGGTTCCCTAAGTGAACTTCAGGATAAAGCAAGAGAACTAATGCTGCGATGTTAA	3849	0.4126	MSSSRRNTNGRSPLVNQQRQITSFFTKSASPSPSPTLSKTTQKPNPNPNPTPLNAKHKPLLLIGASASPPSSSLYGQEVVGRRIKVYWPLDNAWYEGSVKSFDSLTSKHLVRYDDDEEESLDLSKEKVHLLQDSSSKKLKRLRRGVPVVRKMVIDDGEEEEGNDAADGDDSDDEDWGNNAALEDAGDGDEDTDLEEEGDEAEMAKGKPGGKVEGRKRKLSGTVKQESAKKSKSGVEVGKGAFKFSVSEPTSNLENKNTSNGADNVVTAEASERFASREAEKLRFLKVDRRDAKRRRPGDDNYDSKTLYLPPDFLKNLSDGQKQWWDFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMHVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSSNPEAAYLMALTEHHENNPNEISEHIYGVCIVDVATSRVILGQFKDDLECSALCCILSEIRPVEIVKPAKLLSAETERVLQKHTRNPLVNELVPIVEFWDADKTVDQLKKIYGNTNDVSVEDSGLPDVLLELVKTGDDNRSALSALGGALYYLKQAFLDERLLRFAQFELLPCSGFGDFASKPYMVLDAAALENLEIFENSRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESIKERQEAVAGLKGVNLPSALEFRKALSKLPDMERLLARIFSSSEASGRNANKVVLYEDASKKQLQEFISALRGCEQMEQACSSLGVILNHVKSRQLHNLLTPGKGLPDVCMDLNHFKDAFDWVEANNSGRIIPREGVDTEYDSACKAVKEIESSLLKHLKEQRKILGDTSITYVSVGKDSYLLEVPENLSRNIPRDYELRSSRKGFFRYWSPDIKLFLRQLSRAESEKESLLKSTLQRLISRFCEHHTKWKQLVSTTAELDVLISLAIAGDYYEGPTCRPNFIGTLCTKEAPYLHAKNLGHPVLRSDTLGKSAFVPNDITIGGPDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGANVPAESFDLSPIDRIFVRMGAKDNIMAGQSTFLTELSETAPMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVSLCHMACQVGTGIAGLDEVTFLYRLTPGACPNSYGVNVARIAGLPSSVLQKAAAKSREFEATYGKCRKEAICVGSLSELQDKARELMLRC	1282

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca03g02778	1282	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1020	1252	IPR027417	-
Cca03g02778	1282	Pfam	MutS domain V	1061	1251	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	Gene3D	-	693	997	-	-
Cca03g02778	1282	SUPERFAMILY	Tudor/PWWP/MBT	79	119	-	-
Cca03g02778	1282	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	287	1262	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Cca03g02778	1282	Gene3D	-	1008	1278	IPR027417	-
Cca03g02778	1282	Gene3D	DNA repair protein MutS, domain I	276	437	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	Coils	Coil	944	964	-	-
Cca03g02778	1282	PIRSF	Msh6	1	1280	IPR017261	GO:0006298\|GO:0030983
Cca03g02778	1282	Pfam	MutS domain I	321	433	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	MobiDBLite	consensus disorder prediction	158	199	-	-
Cca03g02778	1282	Gene3D	-	77	129	-	-
Cca03g02778	1282	SUPERFAMILY	DNA repair protein MutS, domain I	306	429	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	MobiDBLite	consensus disorder prediction	200	233	-	-
Cca03g02778	1282	SUPERFAMILY	DNA repair protein MutS, domain III	694	1000	IPR036187	-
Cca03g02778	1282	SMART	DNAend	696	1037	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	MobiDBLite	consensus disorder prediction	1	74	-	-
Cca03g02778	1282	MobiDBLite	consensus disorder prediction	150	234	-	-
Cca03g02778	1282	Gene3D	MutS, connector domain	442	615	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	SMART	mutATP5	1057	1249	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	Coils	Coil	693	694	-	-
Cca03g02778	1282	Pfam	MutS family domain IV	866	956	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	Pfam	MutS domain II	444	594	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	Gene3D	-	842	973	-	-
Cca03g02778	1282	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	287	1262	-	-
Cca03g02778	1282	SMART	TUDOR_7	76	136	IPR002999	-
Cca03g02778	1282	MobiDBLite	consensus disorder prediction	1	44	-	-
Cca03g02778	1282	Pfam	MutS domain III	696	997	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Cca03g02778	1282	SUPERFAMILY	DNA repair protein MutS, domain II	438	637	IPR036678	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g02778	Cca-Chr3	49154422	49163339	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g02778	K08737		-	gmx:100811104	1088.17

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g02778	03	49154422	49163339	Cca03g02778	03	49154422	49163339	ECH