Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02767 ATGGAGAGACAGAGAAGTTTCTCCTTCAAACCCACTAGGTTTTTGGTTTTCTCATTCACAATCTTTTCCTCCTTCCTCATCCTTTCTACTTTCACCATCTGGCTCACCAATTCCTCACCTTTAATTCGTCAACAGGttcatcttcacttcaacacttcttctaattcttcttcttctGTGGGACCTCCTCCTTTAACTGTTCAATCCTTGACTGGTTTCACCAAAAACTTCACTGTAAGTGGTGTCAAAGTTCCAACTTTGATCGATAACCGTCTTGCTAGGACCCAGAGAAGCTTCTCTAGATCCAAATCTGAACCTGTACGACACCATGTTGATGTTGGTGCTTCAAATGTTAACTTCACGGCAATGCAAGAGCGTGGAAATTCACCTGAGAGAGGACCCGGCAACGAAGAGAAGAAAGTAGTTGCGGGTGGTTTAGTTGGGGAAACTCAAGTTGCTATTTTGACGAAGATTGAACAGAAGAGAGTTAAAGGATGTGATTTAACAAAAGGGTATTGGGTTTTTGATGAAAGCTATCCCCTTTATTCCAAAggttcgtgcccttttgtggatgaaggttttgattgtgagggaaatggaagattggatagaaactactctaagttgagatggcagcccaaaggctgtgaccttccaagGTTCAATGCAACAAAAATGCTGGAGTTGATTAGAGGGAAAAGGCTTGTTTTTGTGGGTGATTCCATTAATAGGAACCAATGGGAATCAATGTTGTGCATGTTATTGGGGGCTATTGAAGATCCAAAGAGAGTGTATGAGACCCATGGAAGGAAGATTACCAAAGAGAAGGGAAATTATAGTTTCAGGTTTCTGGATTATAAATGTACCGTTGAATACTATGCCAGTCATTTCTTGGTTCATGAAAGTAAGGCAAGAATAGGGCAAAAACGAAGACCAACCTTGCGAATTGATGCTATTGATCACGGTTCTTCTAGATGGAGGGCAGCTGATATTTTGGTTTTCAACACTGCACATTGGTGGTCACATTACAAAACAAAAGCTGGGATTTATTACTACCAAGAAGGAAGTCTAGTTCATCCCCAGCTAAATGTTTCTACAGCTTTCAGGAAAGCTTTATTGACTTGGGCTTCATGGGTGGACAAACACATTGATCACAGAAAAACCCGAGTTTTCTTTCGAAGTTCAGCACCATCACATTTCAGGGGTGGTGATTGGAATTCCGGAGGGCATTGCACAGAAGCCACTCTTCCTCTTAATGAAACCTTAAGCACTACTTATCCTGAGAAGAATATAATCGTAGAGGAGATAATAAAGCAAATGAAAACTCCTGTGACATTGTTGAATATAACTAGTTTGTCAGAATATAGGATTGATGGCCACCCATCAATTTATGGGAGAAAAACACGGTCCTCTAAGATTCAAGATTGTAGCCATTGGTGCCTTCCAGGGGTTCCTGATACATGGAATGAACTATTATATTTTTATCTACAAAGTAGATGA 1500 0.3653 MERQRSFSFKPTRFLVFSFTIFSSFLILSTFTIWLTNSSPLIRQQVHLHFNTSSNSSSSVGPPPLTVQSLTGFTKNFTVSGVKVPTLIDNRLARTQRSFSRSKSEPVRHHVDVGASNVNFTAMQERGNSPERGPGNEEKKVVAGGLVGETQVAILTKIEQKRVKGCDLTKGYWVFDESYPLYSKGSCPFVDEGFDCEGNGRLDRNYSKLRWQPKGCDLPRFNATKMLELIRGKRLVFVGDSINRNQWESMLCMLLGAIEDPKRVYETHGRKITKEKGNYSFRFLDYKCTVEYYASHFLVHESKARIGQKRRPTLRIDAIDHGSSRWRAADILVFNTAHWWSHYKTKAGIYYYQEGSLVHPQLNVSTAFRKALLTWASWVDKHIDHRKTRVFFRSSAPSHFRGGDWNSGGHCTEATLPLNETLSTTYPEKNIIVEEIIKQMKTPVTLLNITSLSEYRIDGHPSIYGRKTRSSKIQDCSHWCLPGVPDTWNELLYFYLQSR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02767 499 Pfam PMR5 N terminal Domain 165 217 IPR025846 -
Cca03g02767 499 PANTHER - 116 498 IPR029965 -
Cca03g02767 499 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 218 493 IPR026057 GO:0016740
Cca03g02767 499 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 116 498 IPR029962 GO:0016413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02767 Cca-Chr3 49062080 49064921 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02767 - - gmx:100819457 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02767 03 49062080 49064921 Cca03g02767 03 49062080 49064921 ECH