Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02754 ATGGCTCCCCCTGACGATACGGTGAATCCCACCTTGGAACTCAAGTCTCTCGAAAAGATGTTTGATTTAAGCGACGGAAAATTCACCGTGAGAGGCGTGCCGTTACTCTCTCAGGTTCCCAATAATGTGACTTTCAGTTCGTTCTCCTCACTCTGTGAACCCCGTGACGCCCCACCTTCCATCCTTCAACGTGTCATTGCCGCCTCACACAAAGGTGGCTTCTTCGGATTCTCCCAGGTTTCCCCTTCTGACAGGTTGACAACCTCCCTCGGAAGCTTCAGCGGCAGAAGCTTCCTCAGCATCTTCCGCTTCAAAACCTGGTGGTCTACCCAGTGGGTCGGAAACTCCGGTTCAGACCTACAAAAAGAAACCCAGTGGGTCCTCATAGAAATCCCCGAAACAAAATCTTACGTTGTAATTATTCCCATCATTGAAAGCAGTTTCAGGTCCGCTCTTCACCCTGGCTCTGATGGCCACGTCATGATTTGCGCCGAGACTGGTTCTACTCAAGTGAAAGCATCGACTTTGGGTGCAATCGCCTACGTCCACGTGGCGGAAAACCCTTACAACTTGATGAGAGAAGCCTATAGCGCTCTCAGGGTTCACCTCGGTTCGTTCAGGTTGTTGGAGGAGAAAACCGTTCCCAGAATCGTTGACAAGTTCGGTTGGTGCACGTGGGACGCGTTTTACTTGACTGTCAACCCTGTTGGGGTTTGGCATGGTCTTAAGGATTTTGCTCAAGGTGGTGTGTCCCCCAGGTTTCTTATCATTGATGATGGATGGCAGAGTTTGAATTTTGACGGTGATGATCCCAACCAGGATGCTAAGAATCTTGTTCTGTGTGGGGAACAAATGAATGCAAGGCTTCACAGGTTTGATGAAGGTGACAAGTTTAAGAAATATGAATCAGGACTCCTCTTGGGACCTAATGCTCCTTCTTTCAACCCAAAGACGGTAAAGGAGTTGATTGCGAAGGGGATTGAAGTTGAGCGTTTGGGGAAGCAGCGTGATAAGACCATCTCATGTGGCTCTGATTTGAGTGAGATTGAGTCGAGGATCATGAAGGTTAAGAAGGAAATTGAGGATCTCTTTGGTGGGGAAGGGAAAGAATGTGGAGGGTGTTGTTCCAAAGCAAAGGAGAGTGGTGGGATTAAGGCTTTCACAAGGGACTTGAGGAGTGTGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCGCTTTGTGGCGCGTGGGGTGGTGTGAGGCCAGGAGCTACACACCTGGATTCCAAGATAATCCCTTGCAAACTCTCCCCTGGCCTTGATGGGACAATGGAAGATCTTGCTGTGGTTAAAATCGTGGAAGGTTCCATTGGCCTTGTTCATCCTCATCAAGCTAATGACTTTTATCATTCCATGCACTCTTATCTTGCCCAATCTGGTATTTCAGGAGTCAAAGTTGACGTCATTCATTGTCTTGAATATGCGTGCGAGGAATATGGAGGCAGAGTCGAGCTTGCCAAGGCTTATTACGATGGGTTGTCAAACTCCATTGTCAAGAATTTCAATGGAAATGGAATCATCGCTAGCATGCAGCAGTGTAACGACTTTTTCTTCCTTGGAACCAAGCAAATTGCCATGGGAAGAGCTGGGGATGACTTTTGGTTCCAAGATCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAGGGGGTGCACATGATACATTGTTCCTACAACAGCTTGTGGATGGGGCAGATGATTCAGCCTGATTGGGACATGTTCCAATCGGATCATGTGTGTGCCAAATTTCATGCGGGTTCGAGGGCTATTTGCGGTGGTCCTGTCTATTTGAGTGACAGTGTGGGCTCTCATGACTTTGATCTCATTAAGAAGCTTGCGTTCCCTGATGGTACTGTCCCCAAATGCATATACTTTGCCCTTCCAACAAGAGACTGTCTTTTCAACAACCCTCTCTTTGACCACAAAACTGTTCTCAAAATTTGGAACTTTAATAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCTAAGGTGCAGAAGATCAGGGGTTTCCCTGAGTGCTACAAGCCAATATCTTGTACTGTTCATGTAACTGAGGTTGAATGGGACCAAAACAAGGAAGCATCCCATATGGGTAAGGCAGATGAGTATGTTGTGTACCTCAATCAGGCTGAGGAACTGCATTTGATGACTCACAAGTGTGAACCACTCCAATTTACTATCCAACCAACCACTTTTGAGCTCTACAACTTTGTCCCACTCACAAAGCTAGGTGGTGGCATCATCAAATTTGCACCAATTGGGCTAACAAATATGTTCAACAGTGGAGGGACAATTCAAGAATTGGAGTATGTTGAGAAGGGTGCTAAGCTTAAGGTCAAGGGTGGTGGGAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTGCAACTCAATGGTTCTGATGCTGCCTTTGAGTGGCTGCCTGATGGCAAATTAACTCTCAACCTTGCTTGGATTGAAGATGCGTGTGGGGTTTCTGATTTGGCAATTTTCTTTTAG 2565 0.469 MAPPDDTVNPTLELKSLEKMFDLSDGKFTVRGVPLLSQVPNNVTFSSFSSLCEPRDAPPSILQRVIAASHKGGFFGFSQVSPSDRLTTSLGSFSGRSFLSIFRFKTWWSTQWVGNSGSDLQKETQWVLIEIPETKSYVVIIPIIESSFRSALHPGSDGHVMICAETGSTQVKASTLGAIAYVHVAENPYNLMREAYSALRVHLGSFRLLEEKTVPRIVDKFGWCTWDAFYLTVNPVGVWHGLKDFAQGGVSPRFLIIDDGWQSLNFDGDDPNQDAKNLVLCGEQMNARLHRFDEGDKFKKYESGLLLGPNAPSFNPKTVKELIAKGIEVERLGKQRDKTISCGSDLSEIESRIMKVKKEIEDLFGGEGKECGGCCSKAKESGGIKAFTRDLRSVFKGLDDVYVWHALCGAWGGVRPGATHLDSKIIPCKLSPGLDGTMEDLAVVKIVEGSIGLVHPHQANDFYHSMHSYLAQSGISGVKVDVIHCLEYACEEYGGRVELAKAYYDGLSNSIVKNFNGNGIIASMQQCNDFFFLGTKQIAMGRAGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPVYLSDSVGSHDFDLIKKLAFPDGTVPKCIYFALPTRDCLFNNPLFDHKTVLKIWNFNKYGGVIGAFNCQGAGWDPKVQKIRGFPECYKPISCTVHVTEVEWDQNKEASHMGKADEYVVYLNQAEELHLMTHKCEPLQFTIQPTTFELYNFVPLTKLGGGIIKFAPIGLTNMFNSGGTIQELEYVEKGAKLKVKGGGRFLAYSSESPKKLQLNGSDAAFEWLPDGKLTLNLAWIEDACGVSDLAIFF 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02754 854 PANTHER - 1 854 IPR008811 -
Cca03g02754 854 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 854 - -
Cca03g02754 854 Pfam Raffinose synthase or seed imbibition protein Sip1 21 837 IPR008811 -
Cca03g02754 854 SUPERFAMILY (Trans)glycosidases 217 626 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02754 Cca-Chr3 48943173 48946803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02754 21 854 Glycoside Hydrolase AT4G01970 57.938 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02754 K06611 - gmx:100815922 1543.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02754 03 48943173 48946803 Cca03g02754 03 48943173 48946803 ECH