Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02749 ATGGGTACGGAGAGAAAGAGGAAGGTGAGTTTGTTCGATGTGGTAGACGACTCTGTGGCCAAGATGGCGAAAACCAATGGCGGCGCCAATAACAGCGTTGTTAACGCTCTCATCAATCGCTGGAACGCAAAGCCTTACTCCCAACGCTACTTCGACATTTTGGAGAAGAGGAAAACCCTCCCCGTTTGGCACCAGAAAGACGACTTTTTGAAGGTCCTCAAAGATAACCAGACTTTGATTCTCGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAATTAGAGACACCCGATAAACGTAAGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCGCGTCGTGTGGCCGAGGAGATGGATGTAACTATTGGCGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCAAGGACGGTTTTGAAGTATCTTACAGATGGTATGCTCTTAAGAGAAGCAATGACAGATCCGCTTTTGGAACGATACAAGGTTATTATTCTTGATGAGGCTCATGAGAGGACTTTGGCCACGGATGTGCTGTTTGGCCTACTGAAGGAAGTGCTTAAAAATAGACCTGACATGAAGTTGGTTGTTATGAGTGCGACTCTTGAGGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTTTATACTCAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAGATACACATGTGTGAGCCTCCTGGTGATATACTTGTGTTTCTGACCGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAAATAAAGAAATTGCTAATCTGGGAGATCAGGTGGGCCCTGTCAAAGTGGTACCCCTGTATTCTACCCTTCCTCCAGCTATGCAGCAGAAGATTTTTGAGCCACCACCACCTCCACTGAAAGAGGGTGGGCCACCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGCATTGTTTATGTCATTGATCCCGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTGGAGTCTTTGTTAGTATCACCAATATCAAAAGCTAGTGCACATCAGAGATCAGGGCGTGCCGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTACACCGAGAAAAGTTTCAATAATGATCTTCAGCCTCAGACCTATCCTGAAATTTTAAGATCAAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGGATCGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACCTGGGTGCGCTGGATGACGAAGGTAACCTAACAAAACTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCACAGATGTCAAAGATGCTCGTTGTTAGTCCCGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTCTCAGGTATTATTCTTCTATTTTGTTGCTTTTTTGTGTCTGTCCAGTTTCCCCGCATAATGCTAAGGAAGTGTAGTTCTGCTGGGATCCATTTTGAAATGGACTCCCTGCTGTTGTGCATGTGCAAGATGATAATCTTGTGA 1701 0.4468 MGTERKRKVSLFDVVDDSVAKMAKTNGGANNSVVNALINRWNAKPYSQRYFDILEKRKTLPVWHQKDDFLKVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRKKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEIANLGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSGIILLFCCFFVSVQFPRIMLRKCSSAGIHFEMDSLLLCMCKMIIL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02749 566 CDD SF2_C_RHA 243 411 - -
Cca03g02749 566 SMART ultradead3 57 248 IPR014001 -
Cca03g02749 566 Pfam Helicase associated domain (HA2) 465 521 IPR007502 GO:0004386
Cca03g02749 566 Pfam Helicase conserved C-terminal domain 270 402 IPR001650 -
Cca03g02749 566 PANTHER ATP-DEPENDENT RNA HELICASE 1 523 - -
Cca03g02749 566 Gene3D - 9 241 IPR027417 -
Cca03g02749 566 SMART ha2_5 464 561 IPR007502 GO:0004386
Cca03g02749 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 521 IPR027417 -
Cca03g02749 566 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Cca03g02749 566 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 523 - -
Cca03g02749 566 Pfam DEAD/DEAH box helicase 71 224 IPR011545 GO:0003676|GO:0005524
Cca03g02749 566 Gene3D - 242 424 IPR027417 -
Cca03g02749 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
Cca03g02749 566 Gene3D - 448 553 - -
Cca03g02749 566 SMART helicmild6 285 403 IPR001650 -
Cca03g02749 566 Coils Coil 284 304 - -
Cca03g02749 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 444 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02749 Cca-Chr3 48863122 48867049 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02749 K12820 - gmx:100807162 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02749 03 48863122 48867049 Cca03g02749 03 48863122 48867049 ECH