Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02747 ATGGATGCTCTAACTCTAACCCCAATTTCTTCAGCAACCACATTCAGTGGTCAACACCATCGCCACCCACTGAAACGCTCACTTTTCAATTTCGCACCTCCGAAGCAAAACAGAAGCCTCGGAATCCGAATCCGAATCCGATTATCCTCTTCCCCAAACCACAACGAGAACCAGTCTTCTCCCGGATTGTACTCCGCCAAGAAATTCGACCTGACGGCGTCAAACGTTGACCTGGTTCTGGACGACGTTCGGCCCTACCTGATCGCCGACGGAGGCAACGTGGACGTTGTCTCGGTGGAAGACGGCGTGGTATCTCTCCGTCTGGAAGGAGCGTGTGAGAGCTGCCCCAGCTCCACCACGACCATGAAGATGGGAATCGAGCGCGTTCTCAAGGAAAAATTTGGAGACGCCGTTAAGGATATTCAGCAAGTCTACGATTACAACCAACCGAGGGAGACAACGCCCCAGGCTGTGAATAATCATCTTGAGATATTGAGAGCGGCCATTAAGAATTACGGTGGCAGCGTGCAAGTGTTATCTGTTGAAGGCGGGGAGTGCCACGTTAAGTACGATGGACCTGACTCCATTGGATCAGGAATCAAAGCAGCCATCAAGGAGAAGTTTCCAGATATTGTCAATGTTACCTTCATCACATAG 657 0.5084 MDALTLTPISSATTFSGQHHRHPLKRSLFNFAPPKQNRSLGIRIRIRLSSSPNHNENQSSPGLYSAKKFDLTASNVDLVLDDVRPYLIADGGNVDVVSVEDGVVSLRLEGACESCPSSTTTMKMGIERVLKEKFGDAVKDIQQVYDYNQPRETTPQAVNNHLEILRAAIKNYGGSVQVLSVEGGECHVKYDGPDSIGSGIKAAIKEKFPDIVNVTFIT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02747 218 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 152 217 IPR034904 -
Cca03g02747 218 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 50 216 - -
Cca03g02747 218 Pfam NifU-like domain 76 136 IPR001075 GO:0005506|GO:0016226|GO:0051536
Cca03g02747 218 Gene3D - 153 217 IPR034904 -
Cca03g02747 218 Gene3D - 68 152 IPR034904 -
Cca03g02747 218 PANTHER NIFU-LIKE PROTEIN 1, CHLOROPLASTIC 50 216 - -
Cca03g02747 218 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 74 144 IPR034904 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02747 Cca-Chr3 48853603 48854639 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02747 K22074 - gmx:100527356 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02747 03 48853603 48854639 Cca03g02747 03 48853603 48854639 ECH