Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02724 ATGCTTTGCGTTAATAGATTGCTGTTGCGGACGCCATGTTCCAGCCCCCGCAACATGTGTACCGTTACATCGGCAGAGCTCAATTACATGATCAACACTTACATGCAAGACGACAACATAAGTCATGCCCGCAAACTGTTTGATGAAAACCCCTCGTCCCGCAACCTCGTTTCCTGGAACATGATGATGTATGCCTACGCCAAACATCATCAAATTCAACATGCCCACGACCTGTTCGATCAAATGCCCCTTAAAGACGTAGTTTCCTGGAATACCATGCTCTCTGGTTTTCACAGAACCTCGAACTCTGATGGGTTGTACCACTGTTTCTTGCAAATGGGAAGAGCTGGTGTGCCCCCTGATGACTATACCATTTCCACATTCCTCAGAGCAGTTATAAGTACTGAGTTGGATGTTTTGATCCCCCAGGTTCATGCTCGAGCACTGCATTTGGGACTTAACTTAAGTGTGTTTGTTGGGTCTTCGTTGATCAAAGCTTATGCGAGTTTAAGAGAGGAGGAGGTTTTTAAGCGAGTGTTTGATGATATATTGGCAAAAAATGTCACATCTTGGAACGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGTATGGGTGATGCACAAACAACCTTTGATATGATGCCACAGAGAAACATAATTTCATGGACTACTTTGGTTAATGGTTATATCAGGAACAATAGGATAAACAAAGCAAGGTCTGTTTTTGACAAAATGAGTGAGAGGAATGTGGTGTCTTGGACAGTAATGATTAGTGGGTATGTGAAAAGTAAGAGATTTATGGATGCTTTGAAGCTTTTTGTTCTGATGTTCAAGTCGGGAACTCGTCCCAATCATTTCACCTTTTCAAGTTTGTTGGACGCATGTGCTGGTTGTTCCTCTCTTTTAACGGGAATGCAGTTGCACCTCTGTGTTATCAAGTCTGGCATGGCGGAGAATGTCATCTCATTGACCTCGCTTGTGGATATGTATGCAAAATGTGGGGATACGGATGCTGCATTTCGTGTTTTTGAGTCCATTCTGAATAAGAATCTGGTGTCTTGGAATTCAATAATTGGCGGGTATGCCAGACATGGGCTAGCTACCCGAGCACTAGAGGAGTTTGATAGGATGAAAAAAGCTGGTTTTACACCAGATGAAGTCACTTTTTTAAATGTGTTGTCAGCATGTGTGCATGCAGGTCTTGTTGAAGAAGGTGAAAAGCACTTCACTTCTATGCTGACCGAGTATGGAATCCAGACAGAGATGGAGCACTATACTTGCATGGTGGACCTGTATGGAAAAGCAGGGCAATTTGATAAAGCAGAAAATTTGATCAAGAATTTGCCATTTGAGCCTGACGTGGTGTTGTGGGGTGCGTTGCTTGCAGCTTGTGGCCTGCATTCAAATTTACAACTTGGAGAGTATGCTGCAGAGAGAATCCGCAAACTGGAGAGCAATAATCCTATTTCTTACTCCATGCTTTCAAAAATCCAAGGCGAGAAAGGAATATGGAGCAGTGTAATTGAATTGAGGAATATGATGGAGGAGAGAAAAGTCAAAAAGCAGAAGGCAATTAGCTGGGTCGAGTAA 1590 0.4302 MLCVNRLLLRTPCSSPRNMCTVTSAELNYMINTYMQDDNISHARKLFDENPSSRNLVSWNMMMYAYAKHHQIQHAHDLFDQMPLKDVVSWNTMLSGFHRTSNSDGLYHCFLQMGRAGVPPDDYTISTFLRAVISTELDVLIPQVHARALHLGLNLSVFVGSSLIKAYASLREEEVFKRVFDDILAKNVTSWNALVSGYMEVGSMGDAQTTFDMMPQRNIISWTTLVNGYIRNNRINKARSVFDKMSERNVVSWTVMISGYVKSKRFMDALKLFVLMFKSGTRPNHFTFSSLLDACAGCSSLLTGMQLHLCVIKSGMAENVISLTSLVDMYAKCGDTDAAFRVFESILNKNLVSWNSIIGGYARHGLATRALEEFDRMKKAGFTPDEVTFLNVLSACVHAGLVEEGEKHFTSMLTEYGIQTEMEHYTCMVDLYGKAGQFDKAENLIKNLPFEPDVVLWGALLAACGLHSNLQLGEYAAERIRKLESNNPISYSMLSKIQGEKGIWSSVIELRNMMEERKVKKQKAISWVE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02724 529 Gene3D Tetratricopeptide repeat domain 140 217 IPR011990 GO:0005515
Cca03g02724 529 Gene3D Tetratricopeptide repeat domain 14 138 IPR011990 GO:0005515
Cca03g02724 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 248 IPR002885 -
Cca03g02724 529 Pfam PPR repeat 218 246 IPR002885 -
Cca03g02724 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Cca03g02724 529 Gene3D Tetratricopeptide repeat domain 350 528 IPR011990 GO:0005515
Cca03g02724 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Cca03g02724 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Cca03g02724 529 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 18 527 - -
Cca03g02724 529 TIGRFAM PPR: pentatricopeptide repeat domain 322 351 IPR002885 -
Cca03g02724 529 TIGRFAM PPR: pentatricopeptide repeat domain 57 86 IPR002885 -
Cca03g02724 529 TIGRFAM PPR: pentatricopeptide repeat domain 352 386 IPR002885 -
Cca03g02724 529 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Cca03g02724 529 TIGRFAM PPR: pentatricopeptide repeat domain 220 251 IPR002885 -
Cca03g02724 529 TIGRFAM PPR: pentatricopeptide repeat domain 425 446 IPR002885 -
Cca03g02724 529 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 527 - -
Cca03g02724 529 Pfam PPR repeat 424 446 IPR002885 -
Cca03g02724 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 89 IPR002885 -
Cca03g02724 529 Pfam E motif 467 529 IPR046848 -
Cca03g02724 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Cca03g02724 529 Gene3D Tetratricopeptide repeat domain 218 308 IPR011990 GO:0005515
Cca03g02724 529 Pfam PPR repeat family 85 132 IPR002885 -
Cca03g02724 529 Pfam PPR repeat family 349 397 IPR002885 -
Cca03g02724 529 Pfam PPR repeat family 248 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02724 Cca-Chr3 48589983 48592219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02724 70 529 Glycoside Hydrolase AT3G49170 33.399 6.65e-91 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02724 - - gmx:102665683 905.205