Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g02718 | ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTGAGAGAGAGAGTCCAAACCCTGAGAAGAGTCCAATTCCACCCCCTCCAAGTTTTGTTGCGGCGTCACCTGGTTTTCTTCCACCAAAATTGCATTTACAGCAAGATCAAGCCTCTTCTCGTTCCCTTAAAACCCCGAGCGTTTTATCACCGGCCAATGGGGTTACCACTGGCAGTCCTGTTCCTCACTTGAGCACCCCTCCCGGACCCCCGGTTTTTACGTCGCCTGTCCGTCCAGCTGCCGTTCCCTTTCGGACATCGCCTGCATCGCCTCAGCCGGTTGCATTTTCTTCAGGCTCTTTGCCAATGTCATCGTCTCCACCGCAATATTCAAATGGATCGTTTGAGTTGCAGCACCAAGTTTCTGATAATATAGAAGACCATGTTCCTGTTGGGGAGTCATCGTTTGTTCTTTTTTCTGCTCATAAGGTATTGAAACAGAAGAAACAAGGTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTTTCAATGGGTCCTCATGTAATACAGCGTGATCCTCATCGCTGCCAAAGCTGTGGTGCTTATGCAAATATCTATTGCAATATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGCAAGTGAAGGGGAGTACATTGCGCATAGCAAGGAAGATCTTCGCAGATTTCCGGAATTATCCTCACCCATGTTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCTCACCTACACCATCTACAAAGCTCTTTGCATGCTTTTGTTGATTCTCTCCCGACAACGACAAGATTAGGAATTATACTATATGGTCGTACTGTATCAGTGTATGATCTTTCAGAAGAGGCAATGGCATCTGCTGATGTTCTTCCCGGGGACAAATCACCAAGTCAAGAATCTTTGAAAGCACTGATTTATGGTACTGGTATATACTTGTCTCCGATGCATGCTTCATTGGCTGTAGCACATTCCATATTCTCATCATTGAGGGCATACAAGTTGAATATACCAGAAGCTTCCCGAGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATCCAGGGTCCATCTGCTGATTTGTCCCGGGGGGTGGTCAAAAGGTCAGGGGGAAATAGTAGAATTATTGTCTGTGCTGGCGGACCAAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAATCACCCTAATTATCCTTACATGGAAAAGACAGCAATTAAATGGATGGAGAATCTTGGTCGTGAGGCTCATCGACACAATACTATAATTGATATTTTGTGTGCTGGAACATGTCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAGCATCAGGTGGAGTTTTGGTTCTACATGATGATTTTGGAGAAGCCTTTGGTGTTAATTTGCAAAGAGCATCTGCCAGATCAGCAGGCTCTCATGGTTTGTTAGAATTGCGCACGTCAGATGATATTCTCATCACTCAAGTTGTTGGTCCTGGGGAAGAGTCACACGTAGATACCCACGAATCATTTAAAAATGACACTGCTCTTTATATTCAAATGCTAAGTGTTGAAGAAACACAAAGTTTCTCTCTCTCCATGGAAACTGAAGGAGATATCAAAAGTGATTATGCCTTTTTCCAATTTGCAATTCAGTATTCAAACGTTTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGACTGCCAACAGTAGATAGTATTTCTGCATATCTTGAGAGTGTTCAGGATGAAGTGGCTGCTGTCCTCATTGCAAAAAGAACCCTGTTACGAGCCAAAAACCATTCTGATGCAATTGATATGCGAGCAACAATAGACGAAAGAATCAAGGATATTGCTCTAAAGTTTGGCTCTCAATTACCTAAATCAAAACTTCATAGCTTCCCAAAGGAGCTTTCTCTCCTACCGGAGCTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATCATTGGTCATGAAGATGAGAGGTCTGTGCTGAGGAACTTGTTTCTGAATGCATCCTTTGATCTATCTCTCAGAATGGTAGCACCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCAGCGTATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCTGCATGTAGGACATTGGCCGAAGAGCTGACTGAGTACCGATTTCCAGCTCCTCGCATCCTTGCATTCAAGGAGGGTAGCTCCCAGGCTCGATATTTTGTCTCTCGTCTCATTCCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCGCAACTGAGGTCGTTGACGTCAGAACAGCGGACAAAGCTGAAAGCTAGTTTTGTTCACTTTGACGATCCTAGTTTCTGTGAATGGATGCGAAGTTTGAAAGTGGTGCCACCACAACCAAGCTGA | 2613 | 0.4493 | MANPTQPNVGFTPERESPNPEKSPIPPPPSFVAASPGFLPPKLHLQQDQASSRSLKTPSVLSPANGVTTGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPASPQPVAFSSGSLPMSSSPPQYSNGSFELQHQVSDNIEDHVPVGESSFVLFSAHKVLKQKKQGNVPSLGFGALVSPGREVSMGPHVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNASEGEYIAHSKEDLRRFPELSSPMFDYVQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPTTTRLGIILYGRTVSVYDLSEEAMASADVLPGDKSPSQESLKALIYGTGIYLSPMHASLAVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTAIKWMENLGREAHRHNTIIDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHESFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDYAFFQFAIQYSNVYQADVSRVITVRLPTVDSISAYLESVQDEVAAVLIAKRTLLRAKNHSDAIDMRATIDERIKDIALKFGSQLPKSKLHSFPKELSLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEYRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKASFVHFDDPSFCEWMRSLKVVPPQPS | 870 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g02718 | 870 | MobiDBLite | consensus disorder prediction | 45 | 74 | - | - | |
| Cca03g02718 | 870 | CDD | gelsolin_like | 723 | 814 | - | - | |
| Cca03g02718 | 870 | Gene3D | Sec23/Sec24 helical domain | 609 | 729 | - | - | |
| Cca03g02718 | 870 | Pfam | Sec23/Sec24 zinc finger | 191 | 229 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Cca03g02718 | 870 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 34 | 619 | - | - | |
| Cca03g02718 | 870 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
| Cca03g02718 | 870 | Pfam | Sec23/Sec24 beta-sandwich domain | 517 | 608 | IPR012990 | - | |
| Cca03g02718 | 870 | MobiDBLite | consensus disorder prediction | 102 | 125 | - | - | |
| Cca03g02718 | 870 | Pfam | Sec23/Sec24 trunk domain | 273 | 499 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Cca03g02718 | 870 | Gene3D | - | 181 | 244 | - | - | |
| Cca03g02718 | 870 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 185 | 254 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Cca03g02718 | 870 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 58 | 870 | - | - | |
| Cca03g02718 | 870 | Gene3D | Severin | 737 | 832 | IPR029006 | - | |
| Cca03g02718 | 870 | MobiDBLite | consensus disorder prediction | 75 | 89 | - | - | |
| Cca03g02718 | 870 | CDD | trunk_domain | 265 | 508 | - | - | |
| Cca03g02718 | 870 | Pfam | Sec23/Sec24 helical domain | 622 | 718 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Cca03g02718 | 870 | Gene3D | von Willebrand factor, type A domain | 271 | 516 | IPR036465 | - | |
| Cca03g02718 | 870 | SUPERFAMILY | Helical domain of Sec23/24 | 621 | 721 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Cca03g02718 | 870 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 723 | 863 | IPR036180 | - | |
| Cca03g02718 | 870 | SUPERFAMILY | vWA-like | 272 | 504 | IPR036465 | - | |
| Cca03g02718 | 870 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 58 | 870 | IPR037364 | - | |
| Cca03g02718 | 870 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g02718 | - | - | gmx:100781518 | 1635.93 |