Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02702 ATGATGGTGGCAAGTGAGCTTCATGGATTTTCCATGTCCCTCGGTTCAAAGAAGACATCCTTCCACCGTGACAGGAATCTCTATTCCTCATTCTCTGGCAGCAGAGTGAACTTGCTTCATTCAAAGAATGTACCATCTGGATTTCCTCCACGAAAATTCTTTAGTGTTACACAGAAAAATACAACCAGAAGATTTTTGACTACTTCTACTCTTGCAGACGTTGCGAATGATTTTATGGCCCTTCAATCACCAATACTTACAGGAAAAGAAGCCAACCCGAAGACTGTTGCATCGATCATATTAGGTGGTGGAGCTGGAACTCGTTTATTTCCTCTTACTCAAAAAAGGGCTAAACCTGCTGTGCCATTTGGAGGATGCTATAGGCTGGTGGACATACCAATGAGTAATTGTATTAACAGTGGAATTAACAAAATTTACGTCCTTACACAATTTAATTCCCAGTCCCTCAACCGCCACATTGCTCGAACATATAATTTGGGAGGTTGCATTAACTTTGGAGGTGGTTTTGTTGAGGTGTTGGCAGCAACTCAAACACCCGGGGAATCAGGAAAGAAGTGGTTTCAGGGTACAGCTGATGCTGTTAGACAATTTCTTTGGTTGTTTGAGGATGCTGATCATAAAAATATAGAGAACATTCTGATATTGTGTGGTGATCAGCTCTATCGAATGGATTACATGGAAATTGTGCAGAAGCACATTAATTCATGTGCTGATATATCTGTATCTTGTCTCCCAGTGGATGGCAGTCGGGCCTCTGATTTTGGATTAGTGAAGGTTGATGAAAGAGGACAGATACGCCAGTTTCTTGAAAAACCAAAAGGCGAATTGTTAAGATCTATGCATGTAGATACGAGTATTTTTGGACTATCAGCTCAAGAAGCAAGGAAATTTCCATACATTGCATCAATGGGTATATATGTGTTTAAAATAGATGTTCTGCTAAAAGTTCTCAGGGGCTGTTATCCTACTGCAAATGATTTTGGATCTGAAGTCATTCCAATGGCTGCAAAAGATTTTAATGTCCAGGCATGTCTTTTCAATGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTTTGATGCGAACTTGGCTCTCATGGACCAGCCGCCCAAGTTTCAATTGTATGATCAGACCAAGCCTATTTTTACGTGTCCTCGGTTCCTACCTCCAACTAAAATGGAGAAGTGTGAGGTAATTAACTCTTTGATTTCAGATGGCTGCTTTTTAAAAGAGTGCACAATTGAACATTCCATTGTGGGAATTCGCTCAAGACTTGATTCTGGGGTGCAGATAAAGGATACCATGATAATGGGTGCTGATTATTACCAAACGGAGGCTGAAATAGCATCTCTTTTAGCAGCGGGAAATGTTCCAATAGGCATTGGGAAAAATACCAAAATTGTGAATTGTATAATTGACAAAAACGCAAGAATTGGAAACAATGTAATTATTGCAAACAAAGACAATGTGCAAGAGGCAGACAGAGCATCAGATGGGTTTTATATTCGATCAGGAATCACTGTCGTGTTAAAAGACTCTGTAATTAACAATGGTACAATCATTTAA 1590 0.3956 MMVASELHGFSMSLGSKKTSFHRDRNLYSSFSGSRVNLLHSKNVPSGFPPRKFFSVTQKNTTRRFLTTSTLADVANDFMALQSPILTGKEANPKTVASIILGGGAGTRLFPLTQKRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQFNSQSLNRHIARTYNLGGCINFGGGFVEVLAATQTPGESGKKWFQGTADAVRQFLWLFEDADHKNIENILILCGDQLYRMDYMEIVQKHINSCADISVSCLPVDGSRASDFGLVKVDERGQIRQFLEKPKGELLRSMHVDTSIFGLSAQEARKFPYIASMGIYVFKIDVLLKVLRGCYPTANDFGSEVIPMAAKDFNVQACLFNGYWEDIGTIKSFFDANLALMDQPPKFQLYDQTKPIFTCPRFLPPTKMEKCEVINSLISDGCFLKECTIEHSIVGIRSRLDSGVQIKDTMIMGADYYQTEAEIASLLAAGNVPIGIGKNTKIVNCIIDKNARIGNNVIIANKDNVQEADRASDGFYIRSGITVVLKDSVINNGTII 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02702 529 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 4, CHLOROPLASTIC/AMYLOPLASTIC 2 529 - -
Cca03g02702 529 Gene3D Hexapeptide repeat proteins 395 529 - -
Cca03g02702 529 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 97 493 IPR011831 GO:0005978|GO:0008878
Cca03g02702 529 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 193 201 IPR005836 GO:0005978|GO:0008878
Cca03g02702 529 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 308 318 IPR005836 GO:0005978|GO:0008878
Cca03g02702 529 Pfam Nucleotidyl transferase 98 374 IPR005835 GO:0009058|GO:0016779
Cca03g02702 529 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 102 121 IPR005836 GO:0005978|GO:0008878
Cca03g02702 529 CDD LbH_G1P_AT_C 397 523 - -
Cca03g02702 529 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 2 529 IPR011831 GO:0005978|GO:0008878
Cca03g02702 529 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 394 IPR029044 -
Cca03g02702 529 SUPERFAMILY Trimeric LpxA-like enzymes 393 529 IPR011004 -
Cca03g02702 529 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 490 IPR029044 -
Cca03g02702 529 CDD ADP_Glucose_PP 99 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02702 Cca-Chr3 48334613 48340681 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02702 K00975 - gmx:100786313 1011.52