Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02700 ATGGCTTCAACTCTGCTCCACCTAGCAACCTTCTTCTTCTTACTCTTCACCGCTTCTTATTTCAAGATTGCTGGGGCGGAAACGCACCGCTTGACTACTCTCAAGCTCAACTCTCATATTCTTCAGGAGTCTATTGCTAAACAGATTAACGAAAATCCTGAGGCAGGATGGGAGGCTGCAATAAATCCTCGTTTCTCTAATTATACGGTTGAACAATTTAAGCGCCTTCTTGGAGTTAAACCAACTCCTAGGAAGGAACTGAGAAGTGTACCCGCTATATCTCATCCAAAGTCGTTGAAATTGCCGAAGGATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGCGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGACGTTAATGTATCTCTATCTGTTAATGATCTTCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGATGTGATGGGGGATACCCCATATATGCATGGCGATACTTAGCCCACCACGGTGTTGTCACTGAAGAGTGTGACCCTTATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAACCAGCTTATCGGACTCCCAAGTGTGTTAAAAAGTGTGTAAGTGGGAACCAGCTTTGGAAGAAGTCAAAGCACTACAGTGTCAATGCATACAGGGTCAACTCTGATCCCCATGATATCATGGCAGAAGTTTATAAGAATGGGCCAGTTGAAGTTGCATTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACGTCACAGGTTATGAACTAGGCGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGATGATGGGGAGGACTATTGGCTTCTTGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCAGAAGAGGAACAAATGAATGTGGGATTGAAGATGATGTAACTGCTGGTTTGCCTTCCACCAAAAATCTCGTAAGAGAGGTGActgatatggacgctgacgctgatgctgatgctTCATTTTGA 1080 0.4222 MASTLLHLATFFFLLFTASYFKIAGAETHRLTTLKLNSHILQESIAKQINENPEAGWEAAINPRFSNYTVEQFKRLLGVKPTPRKELRSVPAISHPKSLKLPKDFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNVSLSVNDLLACCGFLCGSGCDGGYPIYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVSGNQLWKKSKHYSVNAYRVNSDPHDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYELGGHAVKLIGWGTTDDGEDYWLLANQWNREWGDDGYFKIRRGTNECGIEDDVTAGLPSTKNLVREVTDMDADADADASF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02700 359 Pfam Papain family cysteine protease 101 334 IPR000668 GO:0006508|GO:0008234
Cca03g02700 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 123 134 IPR000169 -
Cca03g02700 359 SMART pept_c1 101 336 IPR000668 GO:0006508|GO:0008234
Cca03g02700 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Cca03g02700 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 343 - -
Cca03g02700 359 Gene3D Cysteine proteinases 31 343 - -
Cca03g02700 359 PRINTS Papain cysteine protease (C1) family signature 123 138 IPR000668 GO:0006508|GO:0008234
Cca03g02700 359 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Cca03g02700 359 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Cca03g02700 359 CDD Peptidase_C1A_CathepsinB 102 335 - -
Cca03g02700 359 SUPERFAMILY Cysteine proteinases 46 337 IPR038765 -
Cca03g02700 359 Pfam Peptidase family C1 propeptide 41 83 IPR012599 GO:0004197|GO:0050790
Cca03g02700 359 PANTHER CATHEPSIN B-LIKE PROTEASE 3 18 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02700 Cca-Chr3 48309929 48315941 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02700 K01363 - gmx:100778103 692.96