Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02686 ATGAGCAACAGTAACCAAAACCTCGTCCCAAAACCCGACAAATTATGCAGAGTTCCAAGGGTGAAGTACCTCCTGAAGAACGCCGCAAAATCCAAGAGCCTACGACACGCGACACAAATCCACTCCCAAATCGTAACCACCAACGACGCTTCCGTCAGCAACATCAACAGCCTCCTCTTGGTGTATGCAAAATGCGGCTCCATCGACCACACTCTCCTCTTGTTCGCCACAACCCCTCACGCCTCATCCAACGTCGTCACGTGGACCACGCTCATATCCCAACTCTCCCACTCCAACAACCCCTCACGCGCCCTAGCTTGTTTCAACCGCATGCGAAGCACCACGCTCATATACCCAAACCAGTTCACCTTCTCCGCTATCCTACCCGCCTGCGCACACGCGCCGCTCCTCTCCCACGGCCAACAAATCCACGCCTTGCTCCTCAAACATGGCTTCCAAACCGACACCTTCATAGCCACCGCGTTGGTCGACATGTACGCTAAATGTGGCTCCATGTCGCTGGCGCAGAATGTGTTCGACCAAATGCCCCACAGAAACCTCGTTTCCTGGAACTCCATCATTGTTGGCTTTCTTAAAAACAAGCTCTACGGTTGCGCCATTGGGGTTTTCAAAGAGTTTATTCAAAAAACTTCGCTTTTTCCCGACCAAGTTACTTTCTCGAGCGTGTTGAGTGCTTGTGCCGGGTTGGTTGCGTTAGGGCTTGGGAAGCAGGTGCATGGGAGCGTTGTTAAGCGTGGTTTGGTGGGTTTGGTTTACGTTAAGAACTCGCTCGTGGACATGTATTGTAAGTGTGGGGTGTTTCAAGATGCAACAAAGTTGTTCTGTGATGGTGGAGATAGGGATGTTGTTACGTGGAATGTAATTATCATGGGGTGCGTTCATAGCCAGAACTTTGAACAAGCTTGCAACTTTTTCAAAGATATGATAAGGGAAGGCGTGGAACCGGATGAGACTTCGTACTCCTCTCTTCTTCAAGCTTCTGCAAGTATTGCAGTGTTGGCACAAGGCACCTTGATCCATAGTCGTGTATTTAAAACTGGGCATCTGAAAAACGCTTGTGTTTTGAGCTCTTTGGTGACTATGTATGGCAAATGTGGGAGCTTGTTCGATGCTTATCGTGTTTTTGGAGAGGTTAAGGACCGTAATGTGGTTTGTTGGACGGCTATGATAGCAGTTTGCCATCAACATGGTTGTGGAAATGAGGCCATTGAGTTGTTTGAGGAGATGCTGAGAGAAGGGGTTGTGCCGGAATACATTACTTTTGTTTCCGTGTTGTCGGCTTGCAGCCATACGGGGAAGGTTGATGATGGTTTCAAGTACTTCAATTCCATGGCTAATGTGCATCACATTGAACCTGGGCTTGAGCATTATGCTTGCATGGCTGACCTGCTTGGTAGGGTTGGTCGGTTGGAGGAAGCATGGAGGTTTATTGAATCGATGCCGATCGAGCCTGATTCGTCGGTTTGGGGGGCTTTGCTTGGGGCATGTGGAAAGCATGGGAATGTTGAAATGGGAAGAGAGGTTGCTGAGAAGCTTTTCAAGTTGGAGCCGGATAATCCAGGAAACTATGTGCTGCTTTCAAATATTTATACTCGACACGGGATGTTGGAAGAAGCTGATGAGGTTAGAAGATTGATGGGGATCAATGGGGTGAGGAAAGAGACTGGGTGTAGCTGGATTGATGTTAAGAACAGGACCTTTGTGTTCAATGTGAATGATAGGTCACATTCAAGGACACAAGAGATTTATGAAATGTTGCAGAAGTTGAAGGAGTTGATAAAGAGGAGAGGGTATGTGGCTGAGACCCAGTTTGCAACTAACAGTGTGGAAGGCTCTGAAGAGCAGAGTTTGTGGTGTCACAGTGAGAAATTAGCCCTTGCATTTGGTCTTCTGGTCCTCCCACCTGGCTCCCCGGTGAGGATAAAGAAGAATTTGAGGACCTGTGGTGATTGTCACACTGTTATGAAGTTTGCTTCAGAGATTTTTGAGAGAGAAATTATTGTAAGAGATATCAATAGGTTTCATCGATTCACAAATGGGTCGTGCTCTTGTAGAGATTATTGGTGA 2088 0.4761 MSNSNQNLVPKPDKLCRVPRVKYLLKNAAKSKSLRHATQIHSQIVTTNDASVSNINSLLLVYAKCGSIDHTLLLFATTPHASSNVVTWTTLISQLSHSNNPSRALACFNRMRSTTLIYPNQFTFSAILPACAHAPLLSHGQQIHALLLKHGFQTDTFIATALVDMYAKCGSMSLAQNVFDQMPHRNLVSWNSIIVGFLKNKLYGCAIGVFKEFIQKTSLFPDQVTFSSVLSACAGLVALGLGKQVHGSVVKRGLVGLVYVKNSLVDMYCKCGVFQDATKLFCDGGDRDVVTWNVIIMGCVHSQNFEQACNFFKDMIREGVEPDETSYSSLLQASASIAVLAQGTLIHSRVFKTGHLKNACVLSSLVTMYGKCGSLFDAYRVFGEVKDRNVVCWTAMIAVCHQHGCGNEAIELFEEMLREGVVPEYITFVSVLSACSHTGKVDDGFKYFNSMANVHHIEPGLEHYACMADLLGRVGRLEEAWRFIESMPIEPDSSVWGALLGACGKHGNVEMGREVAEKLFKLEPDNPGNYVLLSNIYTRHGMLEEADEVRRLMGINGVRKETGCSWIDVKNRTFVFNVNDRSHSRTQEIYEMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFEREIIVRDINRFHRFTNGSCSCRDYW 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02686 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Cca03g02686 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Cca03g02686 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Cca03g02686 695 Pfam PPR repeat 188 215 IPR002885 -
Cca03g02686 695 Pfam PPR repeat 262 282 IPR002885 -
Cca03g02686 695 Pfam PPR repeat 160 186 IPR002885 -
Cca03g02686 695 SUPERFAMILY TPR-like 305 547 IPR011990 GO:0005515
Cca03g02686 695 Gene3D Tetratricopeptide repeat domain 342 636 IPR011990 GO:0005515
Cca03g02686 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 688 - -
Cca03g02686 695 Pfam E motif 506 568 IPR046848 -
Cca03g02686 695 PANTHER OS07G0578800 PROTEIN-RELATED 12 688 IPR045215 GO:0003723|GO:0009451
Cca03g02686 695 Gene3D Tetratricopeptide repeat domain 241 341 IPR011990 GO:0005515
Cca03g02686 695 Gene3D Tetratricopeptide repeat domain 140 238 IPR011990 GO:0005515
Cca03g02686 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cca03g02686 695 TIGRFAM PPR: pentatricopeptide repeat domain 391 423 IPR002885 -
Cca03g02686 695 TIGRFAM PPR: pentatricopeptide repeat domain 86 113 IPR002885 -
Cca03g02686 695 TIGRFAM PPR: pentatricopeptide repeat domain 290 324 IPR002885 -
Cca03g02686 695 Pfam DYW family of nucleic acid deaminases 604 695 IPR032867 GO:0008270
Cca03g02686 695 Pfam PPR repeat family 388 436 IPR002885 -
Cca03g02686 695 Pfam PPR repeat family 84 132 IPR002885 -
Cca03g02686 695 Pfam PPR repeat family 287 333 IPR002885 -
Cca03g02686 695 Gene3D Tetratricopeptide repeat domain 13 139 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02686 Cca-Chr3 48151671 48153764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02686 84 695 Glycoside Hydrolase AT3G49170 40.741 5.79e-162 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02686 - - ccaj:109797249 1416.75