Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02683 ATGGGGCAAAAGCATTTAGTGGTGGCTTTCTGTTTATGGGCTTTAACATGTTCCCTTCTCCCCTCTTTCTCCTTTGGAATTATGAGAATTGGTTTGAAGAAGAGGCCTCTGGATCTTTATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTGAGATCAGGAAGACCAATGATGGGTGCACACAATCAGTTTAGCAAGTCGAGTGGTGATATTGTACCTTTGAAGAATTACTTGGACGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCTCAGACCtttactgttgtgtttgatactggtagttccaacctttgggttccatcatccaagtgctacttttctCTTGCCTGCTATACCCATAATTGGTACAAAGCAAAGAAATCCAAAACATATGCCAAAAACGGAACATCATGCAAAATAAACTATGGATCTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCAGCGTTGTTGCCAAGCAGCAGGATTTCATTGAGGCTACCCGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTTGATGGGATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCTGTGCCAGTATGGTATAACATGGTGCAGCAAAATCTTATCGGCGAGAAGGTGTTCTCTTTTTGGCTAAATGGGGATCCAAATGCGAAAAAAGGTGGTGAAATAGTTTTTGGTGGTGTTGACCGAAAGCACTTCAAAGGAAACCACACATATGTTCCAGTTACTGAAAAAGGCTACTGGCAGATTGAAATGGGAGACTTTTTCATTGGAGATGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCAGCTATTGTGGATTCAGGAACATCTCTACTTGCTGGTCCAACTCCTGTCGTGGCTGAAATCAACCATGCTATCGGAGCTGAAGGGGTTCTTAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGATGATATGGGATCTCTTGGTATCAGGGGTGGAACCTGGTAACATATGTTCTCAAATTGGCTTATGTTCTTCCAAAAGGGATCAATCCAAGAGGTTAGAAAGTGCTGGAATTGAGATGGTGACTGAAAAGGAACAGACCGAGTTGACAGCAAAAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAGACAGAAGGCAACAAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTTCCAAGTCCATCCGGAGAGTCAGTGATAAGCTGTGATAGTCTCTCTCAGATGCCAAGCATTACATTCACAATTGGAGACAAGCCTTTTGTCCTTACACCAGAGCAGTATATTTTGAGAACCGGAGAAGGCGTTACAGAAGTCTGTCTTAGTGGGTTTATTGCTTTTGATGTTCCTGCTCCACGGGGTCCACTATGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCATCTTTGACTACGGAAATCTCCAAGTTGGTTTTGCCGAAGCTGCCTAA 1530 0.4098 MGQKHLVVAFCLWALTCSLLPSFSFGIMRIGLKKRPLDLYSINAARKAREGLRSGRPMMGAHNQFSKSSGDIVPLKNYLDAQYFGEIGIGTPPQTFTVVFDTGSSNLWVPSSKCYFSLACYTHNWYKAKKSKTYAKNGTSCKINYGSGSISGFFSQDNVKVGSVVAKQQDFIEATREGSLSFLSAKFDGILGLGFQEISVENAVPVWYNMVQQNLIGEKVFSFWLNGDPNAKKGGEIVFGGVDRKHFKGNHTYVPVTEKGYWQIEMGDFFIGDVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGEMIWDLLVSGVEPGNICSQIGLCSSKRDQSKRLESAGIEMVTEKEQTELTAKDTPLCSSCQMLVLWIQNQLRQKATKDRVFNYVNQLCESLPSPSGESVISCDSLSQMPSITFTIGDKPFVLTPEQYILRTGEGVTEVCLSGFIAFDVPAPRGPLWILGDVFMRAYHTIFDYGNLQVGFAEAA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02683 509 Pfam Saposin-like type B, region 2 317 349 IPR008138 -
Cca03g02683 509 SUPERFAMILY Saposin 314 418 IPR011001 -
Cca03g02683 509 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 3 509 - -
Cca03g02683 509 Pfam Saposin-like type B, region 1 381 418 IPR007856 GO:0006629
Cca03g02683 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 285 296 IPR001969 GO:0004190|GO:0006508
Cca03g02683 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
Cca03g02683 509 SUPERFAMILY Acid proteases 17 508 IPR021109 -
Cca03g02683 509 ProSiteProfiles Peptidase family A1 domain profile. 83 506 IPR033121 -
Cca03g02683 509 Gene3D Acid Proteases 28 241 IPR021109 -
Cca03g02683 509 CDD phytepsin 73 507 IPR033869 GO:0004190
Cca03g02683 509 Gene3D - 313 418 - -
Cca03g02683 509 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Cca03g02683 509 PRINTS Pepsin (A1) aspartic protease family signature 235 248 IPR001461 GO:0004190|GO:0006508
Cca03g02683 509 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Cca03g02683 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
Cca03g02683 509 ProSiteProfiles Saposin B type domain profile. 313 353 IPR008139 -
Cca03g02683 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Cca03g02683 509 Pfam Eukaryotic aspartyl protease 82 508 IPR033121 -
Cca03g02683 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 3 509 IPR001461 GO:0004190|GO:0006508
Cca03g02683 509 Gene3D Acid Proteases 242 509 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02683 Cca-Chr3 48111439 48116778 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02683 K08245 - gmx:548009 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02683 03 48111439 48116778 Cca02g01378 02 32274287 32280094 PCT