Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02682 ATGGACGAAAACAGCAATGGTTCCCACATACCCAAGACCAAGAAGCCAAAGATCACACTCATAACACCATCCCAAATACAAGCAGAATTCGCCCACCACGACGCCTCCGTCGCCCGCATCAACAACGGCAGCTTCGGCTCCTGCCCCGCCTCCATCCTCGCCGCCCAGCGCCGCTCCCAGCTCGCCTTCCTCCGCCACCCTGACCACTTCTACTTCAACCAACTCAGCCCCGCCATCCTCCGCTCCCGAACCCTAATCCAGCGCCTCGTCAACGCCCACCACCTCGACGAGATCTCCATCGTCGACAACGCCACCACCGCCGCCTCCATCGTCCTCCAGCACGCCGCCTGGAGCTTCCGCGAAGGCCGCTTCCGCCAGGGCGACGCCGTCCTCATGCTCCACTACGCCTACGGCGCCGTTAAGAAATCCATGGAGGCTTACGTCGCGCGCGCCGGCGGTTACGTCGTGGAGGTTCCCCTCCCGTTCCCCGTTAACTCCAACGAAGAGATCATTTCCGAGTTCAGGAAGGCGTTGGAGAGAGGTAAGAGCAACGGTAAGAGGGTTAGGTTAGCGGTTATCGATCACGTCACTTCCATGCCCTGTGTCGTCATTCCCGTTAAGGAGTTGATTCAGATTTGCAGGGAGGAGGGTGTTGACCAGGTTTTCGTCGACGCTGCGCATTCCATTGGATGTACTGACGTTGACATGCAGGAAATCGGTGCTGATTTCTACACTAGTAATTTGCATAAGTGGTTCTTTTGTCCACCTTCCATTGCCTTTTTGTACGCTCGTAGAAACCCTAAGGGTTCTGCTTTTGATTTGCATCACCCTGTTGTGTCTCATGAGTACGGCAATGGCCTTGCTGTGGAGAGTGCTTGGATTGGGACTAGGGATTACAGTGCTCAGTTGGTGGTTCCGGAGGCGGTGGAGTTCGTTAACCGCTTTGAAGGAGGCATTGAGGGGATCAAGAAGAGGAATCATGAGGGTGTTGTTGAGATGGGGGAGATGCTTGCAAAGGCGTGGGGGACTCACCTTGGCTGCCCCCCTCATATGTGTTGTAGCATGGTTATGGTTGGAATGCCAGCTTCTTTGGGAATTGAAAGTGATTCGGATGCTCTCAAGTTGAGGACGCATTTGAGGGATGCTTTTGGGGTTGAGGTTCCCATTTACTACCGACCGCCGCAAGAGGGGGAGGTTGGGGTGGTGACTGGATACGCAAGGATTTCTTATCAAGTGTATAATAAGGTCGATGACTATTACAAGTTCAGGGATGCGGTTAACCAGCTTGTGCAAAATGGGTTCACTTGTGGTGAGCTTTCGGATTGA 1326 0.5437 MDENSNGSHIPKTKKPKITLITPSQIQAEFAHHDASVARINNGSFGSCPASILAAQRRSQLAFLRHPDHFYFNQLSPAILRSRTLIQRLVNAHHLDEISIVDNATTAASIVLQHAAWSFREGRFRQGDAVLMLHYAYGAVKKSMEAYVARAGGYVVEVPLPFPVNSNEEIISEFRKALERGKSNGKRVRLAVIDHVTSMPCVVIPVKELIQICREEGVDQVFVDAAHSIGCTDVDMQEIGADFYTSNLHKWFFCPPSIAFLYARRNPKGSAFDLHHPVVSHEYGNGLAVESAWIGTRDYSAQLVVPEAVEFVNRFEGGIEGIKKRNHEGVVEMGEMLAKAWGTHLGCPPHMCCSMVMVGMPASLGIESDSDALKLRTHLRDAFGVEVPIYYRPPQEGEVGVVTGYARISYQVYNKVDDYYKFRDAVNQLVQNGFTCGELSD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02682 441 PANTHER L-CYSTEINE DESULFHYDRASE 18 440 - -
Cca03g02682 441 PANTHER ISOPENICILLIN N EPIMERASE-LIKE PROTEIN 18 440 - -
Cca03g02682 441 Pfam Aminotransferase class-V 76 339 IPR000192 -
Cca03g02682 441 SUPERFAMILY PLP-dependent transferases 33 431 IPR015424 -
Cca03g02682 441 Gene3D - 57 314 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02682 Cca-Chr3 48102748 48106358 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02682 K22207 - gmx:100786129 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02682 03 48102748 48106358 Cca03g02682 03 48102748 48106358 ECH