Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02676 ATGGATACCTTCCTGTTCACTTCTGAGTCAGTGAATGAAGGTCACCCCGACAAGCTTTGTGACCAGATTTCTGATGCAGTCCTTGATGCCTGCCTGGACCAAGATCCAGAGAGCAAGGTTGCTTGTGAGACCTGTACCAAGACCAACTTGGTCATGGTGTTTGGAGAGATCACAACAAAGGCTGATGTAGACTATGAGAAGATTGTGCGTGACACGTGTCGTTCCATAGGCTTTGTGTCCAATGATGTTGGCCTTGATGCTGACAATTGCAATGTGCTGGTCTATCTGGAACAGCAAAGCCCTGATATTGCTCAGGGAGTCCATGGCCACCTCACCAAGCAACCTGAGGAGATAGGTGCTGGTGATCAGGGCCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTTATGCCTCTCAGCCATGTCCTTGCAACCCAGCTCGGTGCTCGCCTCACTGAAGTTCGCAAGAATGGAACCTGCACCTGGCTCAGACCTGATGGAAAGACTCAAGTCACAGTGGAGTATTACAATGACAATGGTGCTATGGTCCCGGTGCGTGTCCACACAGTCCTGATTTCTACTCAGCACGATGAAACTGTTAccaatgatgagattgcagctgacctcaaagagcatgttattaagcctgttatacctgagaagtacttggatgagaaaacaatttttcatttgaatccatctggccgttttgtcattggtggtcctcatggtgatgcaggtctcacagggcgcaaaatcatcattgacacctatggtggttggggagctcatggtgggggtgccttctctgggaaggaccccaccaaagtggataggagtggtgcctatattgctagacaagctgcaaagagcattgtggccagtggtcttgctagaaggtgccttgtgcaaatttcatatgcaattggtgttcctgaccccttatcagtgtttgttgacacttatgggactggaaagattccagacaaggagattctgaagattgtgaaggaaaattttgatttcaggcctggaatgatgtccattaatttggacctcaagaggggtgggaatggaaggttcttgaaaacggctgcttatggtcactttggaagagaggaccctgacttcacctgggaggtggtgaagcccctcaagtGGGAGAAGCCCCAAGAGTAA 1182 0.264 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLDQDPESKVACETCTKTNLVMVFGEITTKADVDYEKIVRDTCRSIGFVSNDVGLDADNCNVLVYLEQQSPDIAQGVHGHLTKQPEEIGAGDQGHMFGYATDETPELMPLSHVLATQLGARLTEVRKNGTCTWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGLARRCLVQISYAIGVPDPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEKPQE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02676 393 CDD S-AdoMet_synt 5 384 - -
Cca03g02676 393 Hamap S-adenosylmethionine synthase [metK]. 2 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca03g02676 393 Gene3D - 11 279 - -
Cca03g02676 393 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Cca03g02676 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Cca03g02676 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Cca03g02676 393 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca03g02676 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Cca03g02676 393 Gene3D - 4 242 - -
Cca03g02676 393 TIGRFAM metK: methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca03g02676 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca03g02676 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Cca03g02676 393 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Cca03g02676 393 Gene3D - 117 381 - -
Cca03g02676 393 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 393 - -
Cca03g02676 393 SUPERFAMILY S-adenosylmethionine synthetase 240 389 IPR022636 GO:0004478|GO:0006556
Cca03g02676 393 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02676 Cca-Chr3 48057212 48059522 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02676 K00789 - sly:544155 760.755