Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02673 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTCCCTTCGAGACCTGCTTCGTCGCCTTTTGGTGCTGCACAGCCAGTGACTCCTTTTTCATCAACCGGTCCGGTGGCGGGATCAGAGCCTCCTCCTTACCGGCCTACTCCTCCGGCGCCTCCGCAAGCCGCCACGCCGTTTTCTTCGGCTGGACCCGCTGCAGCTAGACCAGGGGCACCCGGTTTTAGACCTGCACCACCAGGGAGGTTCAGTGATCCATCAATACCTCCTCCTCCGCGAGCATCCAATGCTCCTCCGCCCGGTGGACCGTACCAGCAGTTTCCGGCAGCGCCATTCCCCCCAACCACGCAGCAGCAGCAACGTGCTCCAATGATGGGACAAGCTAGTCAAGCACCGCCTTTTCCCGCGTCTCTTCCAGCACAGCCACAGATGCCTTTTGTTCCAATGGGCTCTCCCCCATCACAAAGTGCTGCTCCTGCGCATTTAGGACCGAATGCTCCTCCGCCTACGTTTCAGCCCACTTTTCCTGGGTACCCGAGTAAGCAGGCTGGTGCTGAAATGCAAGCTCCACCTATGCATTCCAATTTCCCTGCTAATCAAGGAAATTACGGGCCTGCCCCACCTGCAGCGGCTTCACCTTTTTTGTCTCACCAAGGAGGCTACGTTCCATCGCCTCCCATGGCTCCCCCAGTAGGTATGCAGCAGCCAGGCTCTGTGCCCCCTATGGGTTCCGTTCAGGGCTTGGCAGAAGACTTCAATGCGCTCACCATGCAAACTCGTCCTGGAACAATGGATCCATTATTTGACCCTAAGGAGCTTCCAAGGCCATTGGAAGGTGATGTGGAGTCAAAGAATTTGGCTGACATGTATCCCATGAATTGCAGTCCTCGGTATGTTCGTCTCACGACCAGTGCAGTTCCTAGCTCCCAGTCCTTGGCTTCAAGGTGGCACCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCTGAACCTCCTGGTGGGGAAGAGGTGCCTATAGTTAATTTTGCTCCTGCTAGTGTTGTCCGTTGTAGAAGATGCCGCACATATGTGAATCCTTATATGACATTTACGGAAGCTGGAAGGAAGTTCCGCTGCAACGTCTGTACCTTGCTTAATGATGTTCCTAGTGAATATTATGCACAATTAGATGCGACTGGAAAAAGAGTTGATATCAATCAACGACCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCACCTATGCCACCAGTGTATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAATCATGCTTAGATGAGCTGCCTGGCTTTCCACGTACACAAATAGGGTTTGCAACTTTTGACAGCACGATACATTTTTATAACATGAAGTCTTCCTTGACTCAACCACAAATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCACTGCCGGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAACCTTCCTAGATAGTTTGTCAACCATGTTCCAGGACAATGTTAACTTGGAATCAGCATTTGGTCCCGCTCTTAAGTCTGCATTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACTCACTCCCATCTCTTGGTGTTGGTCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTATGGGACAGACAAAGAACATGGACTGAGACTGCCTGAAGATCCATTCTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATCTCAACAAATGTGTATGCATTCAGTGATAAGTACACCGACATTGCCTCCTTAGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTTCAATCAGCCATTCATGGGGAGAAATTGAGACATGAATTAAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTGATGCGTATTAGATGTGCAAAAGGTGTACGCTTCACAACTTATCATGGAAATTTCATGCTAAGGTCCACCGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACAGAATTGGCTGATATCTATCGCCTGGCAGATACTGGTGCAATTGTATCACTGTTAAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTGGAAGATGCACGGACTGCTGTTCAACTAAGAATTGTGAAAGGCCTTAGGGAATATCGAAATCTCTATGCTGTGCAACATCGCCTGGCCAACAGAATGATATATCCTGAGTCGTTAAAGTTCCTAATGTTGTATGGATTAGCCCTTTGTAGATCAACTGCTCTACGTGGAGGTTATGGTGATGTTCCACTGGATGAACGATGTGCAGCAGGACATATAATTATGACCGTAACAATAAAAAGACTGTTGAAACTTCTTTATCCTAGTTTGATTCGACTTGATGAATATCTTCTGAAGGCATCTGTACCAGCTGATGACTTAAAAAGTGTTGAAAGAAGGTTACCTTTGACTGGAGAGAGCTTAGACTCTAGGGGCCTTTATATATATGATGATGGCTTCCGGTGCATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCCAAAAATTTACTTGGGGCAGATTTTGCAGCAGAATTATCAAAGACTACACTTGGTGAGCAAGATAATGAAATGTCAAGGAGGCTAATGAGGGTACTTGAGAAGTTGAGAAATACAGATCGTGCATATTACCAGTTGAGCCACCTTGTGAGGCAAGATATCTCGGCAAGTACAACAGTCATAATATATAGCTTTCCTCGCTAA 2970 0.462 MGTENPGRPTFPSRPASSPFGAAQPVTPFSSTGPVAGSEPPPYRPTPPAPPQAATPFSSAGPAAARPGAPGFRPAPPGRFSDPSIPPPPRASNAPPPGGPYQQFPAAPFPPTTQQQQRAPMMGQASQAPPFPASLPAQPQMPFVPMGSPPSQSAAPAHLGPNAPPPTFQPTFPGYPSKQAGAEMQAPPMHSNFPANQGNYGPAPPAAASPFLSHQGGYVPSPPMAPPVGMQQPGSVPPMGSVQGLAEDFNALTMQTRPGTMDPLFDPKELPRPLEGDVESKNLADMYPMNCSPRYVRLTTSAVPSSQSLASRWHLPLGAVVCPLAEPPGGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDSLSTMFQDNVNLESAFGPALKSAFMVMSQLGGKLLIFQNSLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISTNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTELADIYRLADTGAIVSLLSRLAIEKTLSQKLEDARTAVQLRIVKGLREYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSTALRGGYGDVPLDERCAAGHIIMTVTIKRLLKLLYPSLIRLDEYLLKASVPADDLKSVERRLPLTGESLDSRGLYIYDDGFRCIIWFGRVISPDIAKNLLGADFAAELSKTTLGEQDNEMSRRLMRVLEKLRNTDRAYYQLSHLVRQDISASTTVIIYSFPR 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02673 989 PANTHER OS04G0129500 PROTEIN 28 976 - -
Cca03g02673 989 Pfam Sec23/Sec24 zinc finger 344 381 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cca03g02673 989 Pfam Sec23/Sec24 helical domain 755 858 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cca03g02673 989 MobiDBLite consensus disorder prediction 38 55 - -
Cca03g02673 989 MobiDBLite consensus disorder prediction 1 161 - -
Cca03g02673 989 SUPERFAMILY beta-sandwich domain of Sec23/24 165 753 - -
Cca03g02673 989 Pfam Gelsolin repeat 890 950 IPR007123 -
Cca03g02673 989 SUPERFAMILY Helical domain of Sec23/24 755 862 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cca03g02673 989 MobiDBLite consensus disorder prediction 108 123 - -
Cca03g02673 989 Gene3D Sec23/Sec24 helical domain 744 862 - -
Cca03g02673 989 MobiDBLite consensus disorder prediction 69 107 - -
Cca03g02673 989 Pfam Sec23/Sec24 trunk domain 418 654 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cca03g02673 989 Pfam Sec23/Sec24 beta-sandwich domain 660 744 IPR012990 -
Cca03g02673 989 Gene3D - 291 743 - -
Cca03g02673 989 Gene3D Severin 863 978 IPR029006 -
Cca03g02673 989 MobiDBLite consensus disorder prediction 132 146 - -
Cca03g02673 989 Gene3D von Willebrand factor, type A domain 420 657 IPR036465 -
Cca03g02673 989 CDD Sec24-like 418 659 IPR041742 GO:0006886|GO:0006888|GO:0030127
Cca03g02673 989 Gene3D - 289 402 - -
Cca03g02673 989 PANTHER SEC24-RELATED PROTEIN 28 976 - -
Cca03g02673 989 PRINTS Proline rich extensin signature 58 79 - -
Cca03g02673 989 PRINTS Proline rich extensin signature 1 15 - -
Cca03g02673 989 PRINTS Proline rich extensin signature 38 50 - -
Cca03g02673 989 PRINTS Proline rich extensin signature 107 124 - -
Cca03g02673 989 PRINTS Proline rich extensin signature 145 170 - -
Cca03g02673 989 PRINTS Proline rich extensin signature 82 98 - -
Cca03g02673 989 SUPERFAMILY vWA-like 418 657 IPR036465 -
Cca03g02673 989 SUPERFAMILY Zn-finger domain of Sec23/24 335 417 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cca03g02673 989 MobiDBLite consensus disorder prediction 197 243 - -
Cca03g02673 989 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 871 975 IPR036180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02673 Cca-Chr3 48018986 48027884 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02673 K14007 - gmx:100791083 1659.04