Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02672 ATGGGGTTCCAAAACTTTATATTGTTGATTTTTATGATAACATTGGTTATTGGTGAATATGGGAATTGCAGGGTTATTATTCGTGATTCtcatcaccatcatcatcatcactcaCACAAAAACTCAGCTACCAAAATACTTTATGATAGTGATAATAGTTCCGTTCAACGAAGTGGCAACCATTTTGTTCTAAATGGGAAGCCATACTACTTAAACGGATTCAATGCTTATTGGTTAATGAATATGGCATCCGATCCATCTTCAAGTTCTAAGGTCACTACAGCTTTTCAGCAAGCTGCGCAACAAGGTTTGAACGTAGCAAGAACTTGGGCCTTCAACGATGGAGGTGACAAAGCCCTTCAAATTTCTCCAGGTTCTTATAACGAGAATGTCTTCAAGGGATTGGATTTTGTGATATCAGAAGCAGGAAAAAATGGGGTACAAGTGATACTAAGCTTGGTAAATAACTGGAACGATTTTGGTGGGAAGAACAAGTATGTTCAATGGGCAAAAGAACGTGGTCAGAATGTTAACAATGACGATGACTTCTTCACACACCCTGTTGTTAAGCAATACTACAAAAATCACATCAAAACTGTGTTGACGAGAAAAAATACTATAACTGGATTAATATATAAAGACGATCCCGCTATTTTTGCATGGGAGCTTATGAATGAGCCTCGTTGCCAGAGTGATAATTCCGGAAAATCATTTCAGGATTGGGTGGGGGAGATGGGTGCCTATGTGAAGTCCATTGATAACAAACATTTACTCGAAATAGGGCTTGAAGGATTCTATGGTGAATCAATGCCAGAAAAGAAACAGATCAACCCTGGAGGTATCGAAATAGGAACTGATTTTATTTCTAACAATCAAGTTCCTGAAATTGATTTCGCCACCATCCATCTCTACCCTGATCAATGGCTATCGAACTCTAACGAAACAGCCCAAGATATCTTTGGGCACAAGTGGGTGGAAGCCCACATTGAGGACTCAAATAATGTCTTGAAAAAGCCCATTCTTCTTAGTGAGTTTGGAAAGTCTACAAAGTGTGCAGGATACAGATACAGCGTGGATAAAAGAAATAGTTACTTTGAGAAACAATACAAATTGATATACAATAGTGGTAGCAGGGGAGGATCATGTGTGGGTGGGCTTTTTTGGCAACTAATGGTACCGGGAATGGATGGATATGGTGATGGTTATCAAGTCATCTTTGAAGAGAGTCCTTCAACTGCCCATGTCATCGCTCAACAATCCAAGAGGATGTACTCTTATTCTTCTATTTTCATTTTCCCTCTTTCTGCCCTTCTCTCTCTCTCTGATTTAACTGCTCTTCATTTTCTCCTCACACCCTTCTGTGTCTTTCAATCCACTCTTCCATTTCGCTATATTCATTTACGAGGCTTTTTAGGAGGTAAGTGA 1425 0.3867 MGFQNFILLIFMITLVIGEYGNCRVIIRDSHHHHHHHSHKNSATKILYDSDNSSVQRSGNHFVLNGKPYYLNGFNAYWLMNMASDPSSSSKVTTAFQQAAQQGLNVARTWAFNDGGDKALQISPGSYNENVFKGLDFVISEAGKNGVQVILSLVNNWNDFGGKNKYVQWAKERGQNVNNDDDFFTHPVVKQYYKNHIKTVLTRKNTITGLIYKDDPAIFAWELMNEPRCQSDNSGKSFQDWVGEMGAYVKSIDNKHLLEIGLEGFYGESMPEKKQINPGGIEIGTDFISNNQVPEIDFATIHLYPDQWLSNSNETAQDIFGHKWVEAHIEDSNNVLKKPILLSEFGKSTKCAGYRYSVDKRNSYFEKQYKLIYNSGSRGGSCVGGLFWQLMVPGMDGYGDGYQVIFEESPSTAHVIAQQSKRMYSYSSIFIFPLSALLSLSDLTALHFLLTPFCVFQSTLPFRYIHLRGFLGGK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02672 474 Gene3D Glycosidases 51 427 - -
Cca03g02672 474 Pfam Cellulase (glycosyl hydrolase family 5) 65 352 IPR001547 GO:0004553|GO:0071704
Cca03g02672 474 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 33 425 - -
Cca03g02672 474 PANTHER - 33 425 IPR045053 GO:0004553
Cca03g02672 474 SUPERFAMILY (Trans)glycosidases 56 416 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02672 Cca-Chr3 48009042 48014064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02672 55 430 Glycoside Hydrolase AT5G66460 57.181 2.17e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02672 K19355 - gmx:100791612 635.95