Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02659 ATGGCCTTGAATGCATCTCCAACCTCCCCACCTTTCCCATTCAAACATCTTCTCCTTGTTATAATATCTCATCAACCTCTCTTTCCGCACGTCATAATAATATTCCGCATCGATCCAACAGATCCAGTTCAAGAGAGCATGTCGAAGCCGAACGTGGAAGGAGTGCACAGCGATGTCAAGGTGGTGGAGAGGCCAACAAGAGTAAAGCCTTACGATGTGTTGCTCAGATTTCTTGCCTTCACTCTCACTCTCGTTGCAACCATCATTGTCGCTGTTGACAATCAGACTAAAGTCATCTCCTATGCTGAAATGCAATTCAAAGCCACTGCTAAGTGGGAATACATGTCTGCTATGGTGTTTTTCGTGGTTTCAAACGCAATAGCGTGCTCATACGCGGTTATTTCTTTGGTGATGATGGCGATGGCGAGAAGCAATGGAAAAGAAGATGTAGCAGTGTTGGTGCTAACAGCGCTAGACCTTGTGATGATGGCTTTGTTGTTCTCAGCCAATGGTGCAGCTTCTGCAGTGGGAATGATAGCACAGAAGGGTAACTCGCACGTGCAATGGACGAAAGTGTGCGACGTGTTTGATGCCTACTGTCGCCACATTACTGCTGCATTGGTCCTATCCATTATTGGCTCCACCACCTTTCTCTTGCTTGTGCTGCATTCTGTTCTCAAACTCCATTACAGGTCAACTTAG 702 0.4644 MALNASPTSPPFPFKHLLLVIISHQPLFPHVIIIFRIDPTDPVQESMSKPNVEGVHSDVKVVERPTRVKPYDVLLRFLAFTLTLVATIIVAVDNQTKVISYAEMQFKATAKWEYMSAMVFFVVSNAIACSYAVISLVMMAMARSNGKEDVAVLVLTALDLVMMALLFSANGAASAVGMIAQKGNSHVQWTKVCDVFDAYCRHITAALVLSIIGSTTFLLLVLHSVLKLHYRST 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02659 233 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 50 232 - -
Cca03g02659 233 Pfam Casparian strip membrane protein domain 68 214 IPR006702 -
Cca03g02659 233 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 74 227 IPR006459 -
Cca03g02659 233 PANTHER CASP-LIKE PROTEIN 1E1 50 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02659 Cca-Chr3 47920485 47921975 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02659 - - var:108328473 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02659 03 47920485 47921975 Cca03g02659 03 47920485 47921975 ECH