Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02650 ATGGATCCAGAAAACGCTGCAACGAGAATGGAAGATGAGGAAGAGAAGCAGCGGAGACAGAGAGTGATAATCGTGGGAGCAGGCCCTTCTGGGCTCTCCGCCGCTGCATGCTTGACGAAGCATTCCATTCCGTACATAATCCTGGAAAGAGAAGACTGTTTCGCTTCTCTGTGGAAGAAATACTCGTACGATCGTCTCCACCTTCACCTCAGAAAGCAATACTGCCAGCTTCCCCACAAACCCTTTCCACCCTCTTACCCTCCCTACGTCCCCAAGAACCACTTCCTCCACTACCTCGACGACTACGTCTCCCACTTCCGAATCGCACCTCTCTACCGCAGAACGGTGCAGCTCGCCGAGTACCATCAAGGGGATCAAGAGTGGAGGGTCAAGGCCCTCAATGGAGACTCCGCCCAGGTCGACGACTATTCTGGGAGGTTTTTAGTGGTCGCCACCGGAGAAACCACCGACCCTTTTCTGCCGGAGCTGGAAGGCTTGAGTACCTTCCCTGGGAAGCTTCTTCATTCCACCGGATTCACTTCTTGGAAAGAGTTCAAAGGTGAACATGTTCTCGTTGTGGGGTCGGGGAATTCTGGCATGGAAATCGCCTTGGACCTTGTCAATCATGGTGCCAAAACCTCCATTCTTGTTCGAAGCCCGGTTCATTTTCTGTCAAGGGAGATGGTGAGTTTGGGGTTGTTTCTGTTGAAGTATTTGTCGTTGAGCATGGTGGACTCGTTGATGGTGATACTTAGCACCATAGTTTACGGGGATGTGACCAAATTCGGGGTTGCAAGGCCAAAAGAGGGTCCCTTTTATATGAAGGTCAAGTATGGAAAGTATCCAGTTATTGACGTGGGAACCTATAAAAAAATCAAGTCTGGTGAATTGAAGGTTTTGCCAGCTGAAATAGAAAGCGTGAGAGGCAAGGATGTCCTATTCAAGAATGGTGAGTTGCACCCATTTGACTCCATTGTTTTCTGCACCGGCTTCAAGAGATCAACCAACAAGTGGCTTAAGGGTGATGATTACCTTTTGAATGATGATGGTCTTCCGAAGCCGAGTTACCCGATCCATTGGAAGGGAAATAATGGTCTGTACTGTGTTGGGTTATCGAGGAGAGGTTTCTATGGGGCTGCTGCAGATGCTGAAAATATAGCAAATGATGTAAGCTCCTTCACCAACATCCTTGAGAACAAAATAAACCAACAGTTTTGA 1218 0.486 MDPENAATRMEDEEEKQRRQRVIIVGAGPSGLSAAACLTKHSIPYIILEREDCFASLWKKYSYDRLHLHLRKQYCQLPHKPFPPSYPPYVPKNHFLHYLDDYVSHFRIAPLYRRTVQLAEYHQGDQEWRVKALNGDSAQVDDYSGRFLVVATGETTDPFLPELEGLSTFPGKLLHSTGFTSWKEFKGEHVLVVGSGNSGMEIALDLVNHGAKTSILVRSPVHFLSREMVSLGLFLLKYLSLSMVDSLMVILSTIVYGDVTKFGVARPKEGPFYMKVKYGKYPVIDVGTYKKIKSGELKVLPAEIESVRGKDVLFKNGELHPFDSIVFCTGFKRSTNKWLKGDDYLLNDDGLPKPSYPIHWKGNNGLYCVGLSRRGFYGAAADAENIANDVSSFTNILENKINQQF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02650 405 Pfam Pyridine nucleotide-disulphide oxidoreductase 23 221 - -
Cca03g02650 405 PRINTS Pyridine nucleotide disulphide reductase class-II signature 21 43 - -
Cca03g02650 405 PRINTS Pyridine nucleotide disulphide reductase class-II signature 185 209 - -
Cca03g02650 405 SUPERFAMILY FAD/NAD(P)-binding domain 19 227 IPR036188 -
Cca03g02650 405 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 20 393 - -
Cca03g02650 405 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 20 393 - -
Cca03g02650 405 PRINTS FAD-dependent pyridine nucleotide reductase signature 22 41 - -
Cca03g02650 405 PRINTS FAD-dependent pyridine nucleotide reductase signature 189 207 - -
Cca03g02650 405 SUPERFAMILY FAD/NAD(P)-binding domain 187 387 IPR036188 -
Cca03g02650 405 Gene3D - 8 396 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02650 Cca-Chr3 47854583 47857902 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02650 K11816 - gmx:102668138 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02650 03 47854583 47857902 Cca03g02650 03 47854583 47857902 ECH