Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02647 ATGTTAAATATTGGTTTGAGGAAGCTACAAGACAAGGTTGCACTGATCACAGGAGCAGCTAGTGGAATAGGAAAGGCCATAGCTACCAAATTCATCAATAACGGGGCCAAGGTTATTATTGCTGATATTCAACAACAACTTGGCCAAGAGACTGCTAAAGAACTGGGACCTAATGCTACTTTCATAGCATGTGATGTCACTCAAGAGACAGACATTTCGAATGCTGTTGATTTTGCCATCTCTAAATACAACCAACTTGATATCATGTACAACAATGCAGGGATAGCCTGCAGAAGTCCTCAAAGCATTGTTGACTTGGACCTGGCAGTGTTTGACAGAGTCATGGACATAAATGTTCGTGGGGTTGTGGCAGGCATCAAGCATGCAGCACGTGTAATGATTCCACGTGGAAGCGGGTCCATTCTCTGCACAGCAAGTGTCACAGGAGTGATGGGAGGGGCGGCCCAGCACACTTACTCAATATCCAAGTTTGCAGTTGTAGGCATTGTTAAATCTCTAGCTTCAGAGCTTTGTGGGTATGGAATCAGAGTCAATTGCATATCACCTTTTGCCATCCCCACTCCTTTTGTAATGGGAGAAATGAGTCAGATATATCCTCATGTTGATGCTCAGAGACATGTAGAGATTGTTCACAATGCTGGTGTCCTAAAGGGAGTGAACTGTGAACCCAATGATGTTGCTAATGCTGCACTTTTTCTTGCATCTGATAATGCCAAGTATGTTAATGGGCACAATTTGATTGTGGATGGAGGGTTCACATCTTTTAAGAATTTGGACTTTCCTGCACCAGATCAAGTGCAGTAG 825 0.4352 MLNIGLRKLQDKVALITGAASGIGKAIATKFINNGAKVIIADIQQQLGQETAKELGPNATFIACDVTQETDISNAVDFAISKYNQLDIMYNNAGIACRSPQSIVDLDLAVFDRVMDINVRGVVAGIKHAARVMIPRGSGSILCTASVTGVMGGAAQHTYSISKFAVVGIVKSLASELCGYGIRVNCISPFAIPTPFVMGEMSQIYPHVDAQRHVEIVHNAGVLKGVNCEPNDVANAALFLASDNAKYVNGHNLIVDGGFTSFKNLDFPAPDQVQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02647 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 260 IPR036291 -
Cca03g02647 274 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 266 - -
Cca03g02647 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Cca03g02647 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 IPR002347 -
Cca03g02647 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Cca03g02647 274 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 146 174 IPR020904 GO:0016491
Cca03g02647 274 Gene3D - 4 266 - -
Cca03g02647 274 PRINTS Glucose/ribitol dehydrogenase family signature 13 30 IPR002347 -
Cca03g02647 274 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Cca03g02647 274 PRINTS Glucose/ribitol dehydrogenase family signature 133 149 IPR002347 -
Cca03g02647 274 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Cca03g02647 274 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Cca03g02647 274 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Cca03g02647 274 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 7 266 - -
Cca03g02647 274 Pfam Enoyl-(Acyl carrier protein) reductase 18 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02647 Cca-Chr3 47814673 47817559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02647 7 261 Miscellaneous Gene Families AT4G05530 31.034 3.78e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02647 - - ccaj:109796618 541.962