Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02645 ATGGTCGAGGGTTCTTCGCCTCACCCTCAAACTTCATCACCCCCGGGCGGATATAAAGTTAAAGATGCAAATGAAGATGATCCGTTTAGGGACACTGCGCTCTTTGAGGATACCTTAGTGCTCAATAGTCCTTTCAGTGAAACAGAGGTTGAAAATCTCAATCTGGACACTGAGATTGTAGAAGATTCGGAACCTCCGGATGACATAACAACTGGTACAATGTACAAGTATGAACAAGAAGTAGTGCTTGATAGTGAGGATGAAGAAATGAATAATAGAGATACAGTAACTGTTGCCAAAGGATTTCTTGAAACTAGTCCAACAGTGAAAATTCCTTCAACCCTGTTCCAGAAGAGACGGTCCAAGCCAACTTCTAAGCAAGTAGATCCAAATGGCACCACTTTTGTGAAGTCTGCTGCTGGGCACAAAGGGGCTTTAGTTGATGCTGGCAACTTTGATGACCACAACCATTTATATCTACCTGCACCACTAAATTACGTTCACTCACCAGAGCCTGGGGATTCAACCCAAGATGCACTTGGCTTTGTGGATCAGTACTTGTCATCAAGTGACGTGGACTTGTTTCAAAGAATTCATTGTAGAAAGGCCACTAGGGATAAATCACCTCATGTCCTGAATGCAAGGGGACCACTAAATCTGGCTAAGAAAATTAAAGCTCGAACAAGTGAAGAAAAAGAACCTTTCAATTGGGTTGACAGTAGCCAAAATGACAAAAAAGCTGGCATGTCTGGTAAAAAAATTGAAGCATCTTCTAATTTTGGAAGATACAAACAGACATATACAAGACAGAAAAAGAGTGACCGTCTTCAGAGCCAAGAAAACTGTAGTACAAGCAATAGATGTGATGAGAAGTTGGGCCAAGGTCTGAGAATGGAAACTGAAAATAATAACTCTCTCAAGGAGTTGGATGTTCAGTCAAGTGCTATAAAAGAGAATGTTAATGTTTATTCTGGTGTAACACATATTGAAGACACGTCTGATATCGGTTTAGACACTCAAATAGCTGCTGAAGCTATGGAAGCCTTGGCCGTTGTTCCCCCTTCTGGCTGCTATTTCAATGATACTCATCAAACAGGTAATGCATTTGATGGCTATTTAAGTAATTTGACAGAGAATGAAGCTCATATGAATTTTTTTACATATAGACAGCATCCTGCTAGCACAATAAAATTAAATAGGAAAAATGCACCTTCATCTAGATTTAGTAACAGAACATCTAGCTCATCTTGCATGCACACTAACAAGCAGGAGCCAAATCCTGTCTCAGGGAAAACGAAAAAACTGATGAAAAGCAAGTCAACTGCCGAGGGACAGTTTGACAATAATACTAGTTCACCAATATGCAGTAGACATGTATCACTTGAAGAGGTTTGCCCACTGGGAGAGTATGTAAGTTTTCAATCTGCTGTAGTAGAACCCAAAAATTGGAATAACGAGAGCAGACAGACAAGAACCAAAAATCAATCAAGCCATCGCACAGTGAGGAACAATAATGTCAAGGAGAAGGGTACTATTAAACAGGAAAGGAAGGGGAATGGTTTAGTGGCTGATCCGATGAAGTTGGGTGATAGGACAAAGTGTCTTAATTTGCCTACCAATTCATGTGCAGTTGCTAGGAAAAGCAGGTTGAATCATCAGGCTCAAGTCAGTCCTCAATTATCTGTAACCACCAGTTTTTCAAGGACTAATTCTTGGGTTTATGCAAAAAGATCAAGGGGGAAAAGAAAGAGGTCTAATGTGTCAATCAATCTTGATGCACCTAAAGTTTCGTGTATTGATGAAAAAGAAAATAATGTCTTCTCTGCTAGAAGCCCAGAGGACCAAGCTGACATGGATAAATCAAGTTTTCCTCACGCCCATCCACTTTGCAATGCTTCATGTGTTGACAATGGCAGATGCTTGTTACAGGGTAACTTTGTTCACCCATGTTCAGCTGGTGATGCGATGAAGGTTGAAAACCTGCATGATACACATCCCTTGTTGCTGGAACATGTTGAAATATCATCAATCAAGAGTGTTGAACAATTGAGGTCAGAAAATCCAGCTACAGGTGCTGCAAGCAAAGGCGTAAACGTTTCAAATGCTAACCATACACACACCGAGCATCACAAAAAGCCATGTGACAAAACCCTGCCAAAGACTTCGGCTTTTAAAGAGCTTATTGGATTAAGAGCTCCTCAGTGCACATCAGATATGATGTGGAAAGATCTGAGACATCGAAGGGATATGACAGATGTTCGAGTGCTGTTTAGCCAACATTTGGATGAAAGTGTCATCAAGCAGCAGAAAAAGATCTTGACACGTCTCAATATATCTGTTGCAGCAAGTTCAATGGAGGCCACACATTTCATAGCAGACAAATTTACACGCACAAAGAATATGTTGGAAACAATGGCTCTTGGGAAATTAGTTGTGACACCGTTATGGCTTGAGAGTTGTGGACAAGTCAACTGTTTTATTGATGAGAAAAATTACATTCTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTTAGCATGCCTGTTTCTCTTGCTAGAGCAAGACAGAAGCCACTCCTAAAGGGTAAAAAGGTCTACATCACGCCACATAGTAAACCTGATAAGGATGTGATTGCAAGTTTGGTCACAGCTGTTCATGGCCAGGTAGTAGATGAAAGTAAGGCATGTGCAGACATGAATGATAATATCTTAGATGATCTATTGATTCTTTCTTGTGAAGACGACTATGCAGTATGCCACCATTTCCTTAAGAGAGGAGCTGCAGTTTACAGTTCAGAGGTTGTTCTGAATGGAATTGTAATTCAAAAATTAGAATTTGAGAGACATCAACTCTTCATTAATCAAGTTACAAGGAATAACACAAGTACGTCTAATCGGTTTGGGAAGGTTTACAGAAGACGTTGA 2925 0.4031 MVEGSSPHPQTSSPPGGYKVKDANEDDPFRDTALFEDTLVLNSPFSETEVENLNLDTEIVEDSEPPDDITTGTMYKYEQEVVLDSEDEEMNNRDTVTVAKGFLETSPTVKIPSTLFQKRRSKPTSKQVDPNGTTFVKSAAGHKGALVDAGNFDDHNHLYLPAPLNYVHSPEPGDSTQDALGFVDQYLSSSDVDLFQRIHCRKATRDKSPHVLNARGPLNLAKKIKARTSEEKEPFNWVDSSQNDKKAGMSGKKIEASSNFGRYKQTYTRQKKSDRLQSQENCSTSNRCDEKLGQGLRMETENNNSLKELDVQSSAIKENVNVYSGVTHIEDTSDIGLDTQIAAEAMEALAVVPPSGCYFNDTHQTGNAFDGYLSNLTENEAHMNFFTYRQHPASTIKLNRKNAPSSRFSNRTSSSSCMHTNKQEPNPVSGKTKKLMKSKSTAEGQFDNNTSSPICSRHVSLEEVCPLGEYVSFQSAVVEPKNWNNESRQTRTKNQSSHRTVRNNNVKEKGTIKQERKGNGLVADPMKLGDRTKCLNLPTNSCAVARKSRLNHQAQVSPQLSVTTSFSRTNSWVYAKRSRGKRKRSNVSINLDAPKVSCIDEKENNVFSARSPEDQADMDKSSFPHAHPLCNASCVDNGRCLLQGNFVHPCSAGDAMKVENLHDTHPLLLEHVEISSIKSVEQLRSENPATGAASKGVNVSNANHTHTEHHKKPCDKTLPKTSAFKELIGLRAPQCTSDMMWKDLRHRRDMTDVRVLFSQHLDESVIKQQKKILTRLNISVAASSMEATHFIADKFTRTKNMLETMALGKLVVTPLWLESCGQVNCFIDEKNYILRDMKKEKEIGFSMPVSLARARQKPLLKGKKVYITPHSKPDKDVIASLVTAVHGQVVDESKACADMNDNILDDLLILSCEDDYAVCHHFLKRGAAVYSSEVVLNGIVIQKLEFERHQLFINQVTRNNTSTSNRFGKVYRRR 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02645 974 MobiDBLite consensus disorder prediction 483 502 - -
Cca03g02645 974 MobiDBLite consensus disorder prediction 400 432 - -
Cca03g02645 974 CDD BRCT_MDC1_rpt1 753 827 - -
Cca03g02645 974 MobiDBLite consensus disorder prediction 686 716 - -
Cca03g02645 974 MobiDBLite consensus disorder prediction 268 288 - -
Cca03g02645 974 SUPERFAMILY BRCT domain 746 850 IPR036420 -
Cca03g02645 974 MobiDBLite consensus disorder prediction 231 253 - -
Cca03g02645 974 MobiDBLite consensus disorder prediction 686 703 - -
Cca03g02645 974 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 746 834 IPR001357 -
Cca03g02645 974 CDD BRCT_PAXIP1_rpt6_like 859 945 - -
Cca03g02645 974 Gene3D BRCT domain 858 958 IPR036420 -
Cca03g02645 974 MobiDBLite consensus disorder prediction 483 501 - -
Cca03g02645 974 ProSiteProfiles BRCT domain profile. 745 834 IPR001357 -
Cca03g02645 974 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 10 961 - -
Cca03g02645 974 Gene3D BRCT domain 741 857 IPR036420 -
Cca03g02645 974 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 10 961 - -
Cca03g02645 974 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02645 Cca-Chr3 47803409 47808315 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02645 K14972 - gmx:102659913 1416.75