Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02640 ATGATGCTCCGAATCCGAAGCCGCGACGGCCTGGAGCGCGTGAGCATCGAAAACCCTCAGACCGCAACGGTCTCCGACCTGAAGCGGCAAATCGAAACGCAATTGGGAATCCCAATCGAGAAGCAAACCCTCTCCAGCAACCAGAACCTCCTCCTCGCCAAATCCCCCCAAGATCTCCTCCGATTCACCGACCTCTCCAACCCCGCCGGGCCCCTCTCcgccctccccctcgcccacggctccatcctcttcctcgccTACGACGGCGAGCGCCGCGTCCCCGGCCCCGCCTTCAACCCCGCCGGCTCCTTCGGCCGCAAGATGACCATGGACGACCTCATCGCCAAGCAGATGCGCGTCACGCGCCAGGAGAATCCCCACTGCCAACTCGTCTCCTTCGACCGCGACTGCGCCAACGCCTTCCAGCACTACGTCAACGACACCCTCGCCTTCGCCGTCAAGCGCGGCGGCTTCATGTACGGCACCGTCTCCGACGACGGCAAGGTCGAGGTCGACTTCATCTACGAGCCTCCCCAGCAGGGCTCCGAGGAcctcctcctcctcctccGAAACCCCGACGAGGAGAAGCTCGTCGATGCTATTGCCGTCGGCTTGGGGATGCGAAAAGTTGGCTTCATTTTCACGCAGACCATTAGCCAGGATAAGAAAGACTATACTTTGTCCAATAGAGAGGTGCTTCAGGCTGCCGAGTATCATGCTGAGAGTGGCTTGAAGGAGTGGGTTACTGCGGTGGTTAAGCTTGAGGTCAATGAGGACATGGTCGCCGATGTGCATTTTGAAGCGTTTCAGATGAGTGATGTGTGTGTTAAGTTGTTCAAGGAAGGCTGGTTCGAGACGGAGATAAAGGAGGATCATGATCCCAAGTTGTCAAAGATGAAGAAAGACGTCGTTGTTGGAGTTAAGGATACTAGGGAGGTTGACAATGATTTCTTCTTGGTTGTCGTCAAAATCTTTGATCATCAGGGTCCACTTACATCAACATTTCCCATTGAGAACCGAAACACTCAAGTAACTATGAAGGCGCTGAAGAATCATCTTGGACGGACAAAAAATCTTCCATTTGTGAAGCGAATTTCTGATTTTCATCTTCTTCTTGTGTTAGCGAGGGTTTTAGACCTGAATGCTGATGTTCCTGCATTGACGGAATGTGTGCAGACACAGACTCCCGTACCGGAAGGTTACCAGATCCTCATTGAGTCTATGGCAAACACTGCTTGA 1239 0.5101 MMLRIRSRDGLERVSIENPQTATVSDLKRQIETQLGIPIEKQTLSSNQNLLLAKSPQDLLRFTDLSNPAGPLSALPLAHGSILFLAYDGERRVPGPAFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCQLVSFDRDCANAFQHYVNDTLAFAVKRGGFMYGTVSDDGKVEVDFIYEPPQQGSEDLLLLLRNPDEEKLVDAIAVGLGMRKVGFIFTQTISQDKKDYTLSNREVLQAAEYHAESGLKEWVTAVVKLEVNEDMVADVHFEAFQMSDVCVKLFKEGWFETEIKEDHDPKLSKMKKDVVVGVKDTREVDNDFFLVVVKIFDHQGPLTSTFPIENRNTQVTMKALKNHLGRTKNLPFVKRISDFHLLLVLARVLDLNADVPALTECVQTQTPVPEGYQILIESMANTA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02640 412 ProSiteProfiles MPN domain profile. 130 271 IPR037518 -
Cca03g02640 412 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 102 410 IPR016563 GO:0006511
Cca03g02640 412 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 92 IPR016563 GO:0006511
Cca03g02640 412 CDD Ubl_AtNPL4_like 1 85 - -
Cca03g02640 412 Gene3D - 1 100 - -
Cca03g02640 412 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Cca03g02640 412 Pfam Nuclear pore localisation protein NPL4 1 51 IPR024682 -
Cca03g02640 412 Pfam NPL4 family 168 283 IPR007717 -
Cca03g02640 412 CDD MPN_NPL4 119 374 IPR007717 -
Cca03g02640 412 ProSiteProfiles Ubiquitin domain profile. 1 44 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02640 Cca-Chr3 47760639 47764222 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02640 K14015 - gmx:100779549 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02640 03 47760639 47764222 Cca03g02640 03 47760639 47764222 ECH