Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02632 ATGGCGGTTTCCGAAGAAGAATGCTCTTCCGCCAAGTCAGGTCCGTCTTCGTCTTCCTCCGCCTCGCGCTGCTACCTCTCCAAGTGCGTTCTCAGAGGCAGCGTCGTTCTTCAGGTTCTCCACGCTAACATCCGTTCTCCCTCCTCCAACGACGTCGTTTTCGGCAAGGAAACATCCATTGAATTGGTGGTTATTGATGAGGATGGGAATGTGCGATCTGTGTGTGATCAGCCTGTCTTTGGCACCATCAAAGATCTTGCCATATTGCCCTGGAATGACAAATTTCGCGCGCGTGATCCACAGCTGTGGGGCAAAGACCTTTTGGTTGCTACATCTGATTCTGGGAAGCTGTCGTTGCTCACATTTTGCAATGAAATGCACAGGTTTGTTCCTGTAACACATATTCAGCTATCTAATCCTGGAAACACATTGGATCTTCCTGGAAGAAAGCTAACAGTTCATTCCAGTGGTTGTTTTATTGCTGCCAGTGCATACGAAGATCGGCTGGCTTTGTTTTCTATGTCAATGTCCAGTGGTGATATCATTGATGAGAGAATTGTATATCCTTCTGAAAGTGAAGGAACAACAAATACTTCCAGAAGCATTCAGAGAACCAGCATACGTGGTACTATTTGGAGCATCTGCTTCATTTCACAAGATTCCAAACAAGAAAGAAAGGAGCATAATCCTGTACTAGCTGTTATTATAAATAGGAGGGGAGCAGTTCTAAATGAATTATTATTATTGGAGTGGAATGTTAAAGCACGTAAAATCTTTGTTATTTCTCAGTATGTTGAAGCTGGACCTCTAGCATATGACATTGTTGAAGTTCCTAACTCTGGGGGACTTGCATTTCTATTCAGAGCTGGTGATGTACTCTTAATGGATCTTAGAGATCATCGCAACCCATCCTGTGTCTGCAAGACTAACTTGAACTTTTTACCCAATGCTATGGAAGAACAGCCTTATGTGGAAGACTCTTGTAAACTACACGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCGGGTTATAAATATGTATGCTCGTGGAGTTGGGAACCTGAAAGTAATAAAGATCCCAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATGGAAGTTCTTTTTGATTCCGAAGGCCCTAGAGTTAATCTGTCCGAGTGTCTCTATAAAGGTCTACCTTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATCTAGCTGCTCTTGTGGAAATGGGGGATGGTGTGGTCCTGAAATTGGAAGATGGAAGACTATGCTATACAAATCCTATTCAAAACATTGCACCCATCTTGGATATGGTAGTCGTGGATTATCATGATGAGAAACATGATCAAATGTTTGCTTGTTGTGGTGTGGCACCGGAGGGATCATTAAGAATTATTCGAAATGGTATTAATGTAGAAAAACTACATAGGACTGCTTCTATATATCAGGGGGTAACTGGTACTTGGACCGTCCGAATGAAAGTTACTGATTCACATCATTCTTTTCTAGTTCTATCATTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTAACAGATTCAGTTGGTTTCCAACCTAATGTTTGTACTTTGGCATGTGGCATTGTGACTGATGGTTTGCTTGTTCAAATCCACCAATCTACTGTTAAACTTTGTTTGCCCACTAAGGCTGCTCATTCTGAAGGTATCCCTTTGTCCTCTCCTATTTGCACATCTTGGTCTCCCAACAACGTGAGTATCAATTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGTTTTCTTTTTATACTTGGGGTTAGATTGCTATCAACTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAAAATGAATTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCAAAACAAATCAAATTCATCCACTTCAGAAAATAATAGTAGCATTTCTTCTTTTCAAAGTGGAGTGGACATCAATAAAACCTTTGTTATTGGCACGCATAGGCCTTCCGTGGAAATTTGGTGTTTTGCACCAGCTGGAGGAATTACGGTAGTTGCTTGTGGGACAATTTCATTAACGAATACAATAGGGACTGCTATAAGTGGTTGTGTACCTCAAGATGTACGACTTGTATTTGTTGATAAGTATTATGTTCTTGTTGGATTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCGGCAGAACCATCTCCTTCATCACCAATAAATATGGTGGATACTGCCTTGTCTTCTATAAATTTGGTAAATTCTGGGTCTAATGCTTTTGACAACAGAAATGACCTTCCTTCCACGCTTCAATTGATTGCCATTCGTCGGATTGGCATCACTCCAGTTTTCTTGGTGCCCCTGGACGACACTCTTGATGCTGATATAATTGCTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACACAGCCTTTCCTATACTTCCATCTCATTTCAACCATCCACACACGTGACTCCTGTTCGCTCTATTGAGTGTCCAAAAGGAATATTATTTGTTGCAGAAAACAGTTTACATCTGGTGGAGATGGTCCACAGCAAGAGACTTAATATGCAAAAGTTTCATTTAGAGGGCACTCCACGGAAGGTCCTGTATCATGATGAAAGCAAGATGTTGCTTGTGATGCGGACTGAACTGAATTGTGGTACATGTTTGTCTGACATATGTTGTGTGGATCCCCTAAGTGGGTCAGTACTGTCGTCTTTTAGACTTGAACGTGGAGAAACAGGAAAATCCATGGAACTAATAAGAATTGGAAGTGAGCAGGTGCTTGTTGTTGGAACTAGTCTGTCTCCTGGTCCAGCTATAATGTCCAGTGGTGAAGCTGAGAGTTGCAAGGGCCGACTTCTTGTTCTCTGTCTTGATCATGTGCAAAATTCAGATAGTGGTTCAATGACATTCTGTTCAAAAGCAGGGTCATCATCTCAAAAAAATTCACCTTTCCTTGAAATAGTTACATATGCTCCTGAACAGTTATCAAGCAGTAGTCTTGGCAGCAGTCCTGATGATAATAGTTCTGATGGCATCAAACTCGATGAAAATGAAGTATGGCAGTTCCGATTGGCTTATGCAACTAGGTGGCAGGGAATGGTACTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGCAATGCTTTCTATGTTTGTGGTTTCCCTAATGACAATCCCCAAAGAGTGAGAAGGTATGCTATGGGAAGGACGCGTCACATGATAACATCTTTGACTGCACATTTTACTAGAATTGCAGTTGGTGATTGTCGTGATGGTATCATTCTATTTTCTTATCATGAGGAAGAAAAAAAATTGGTCCAACTTTACTCTGATCCATCACAGAGGATAGTTGCTGATTGCATTCTCATGGATGCTGATACGGCTGTTGTTTCGGATCGTAAAGGAAGCATTGCTGTTTTATGTTCAGATCATTTGGAAGACAATGCAAGTACAGAATGCAACTTAACGTTAAGCTGTGGTTATTTCATGGCTGAGATAGCTATGAGCATCAAGAAGGGCTCTTATTCTTACAGGCTTCCAGCTGATGATGTTTTGCAAGGTGGCAATGGCCCCAAGACAAATGTTGATTCATTACAAAATACTATTATTGCCAGTACCATGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGCTCTTAGAAGCAGTGCAAGCAAGACTTTTTCTCCATCATTTGACTGCGCCTGTTCTTGGAAATGATCATAATGAGTTTCGCAGTCGCGAAAATCGGGTTGGAGTACCCAAAATACTTGATGGTGACATGTTGACTCAGTTTCTGGAGCTGACAAGCATGCAGCAAAAGATGATTTTGTCTTCGGAGCCACCAGATATGGTAAAACCAAGTTTGAAGCCACTCCTAGCCCCCCATGTTTCTGTCAATCAGGTGGTTCAACTTCTTGAACGAGTTCATTATGCTCTGAACTAA 4101 0.4136 MAVSEEECSSAKSGPSSSSSASRCYLSKCVLRGSVVLQVLHANIRSPSSNDVVFGKETSIELVVIDEDGNVRSVCDQPVFGTIKDLAILPWNDKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVPVTHIQLSNPGNTLDLPGRKLTVHSSGCFIAASAYEDRLALFSMSMSSGDIIDERIVYPSESEGTTNTSRSIQRTSIRGTIWSICFISQDSKQERKEHNPVLAVIINRRGAVLNELLLLEWNVKARKIFVISQYVEAGPLAYDIVEVPNSGGLAFLFRAGDVLLMDLRDHRNPSCVCKTNLNFLPNAMEEQPYVEDSCKLHDVDDERFSVAACALLELSDYDPMCIDSDNGGANSGYKYVCSWSWEPESNKDPRMIFCVDTGEFFMMEVLFDSEGPRVNLSECLYKGLPCKALLWVEGGYLAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMVVVDYHDEKHDQMFACCGVAPEGSLRIIRNGINVEKLHRTASIYQGVTGTWTVRMKVTDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFQPNVCTLACGIVTDGLLVQIHQSTVKLCLPTKAAHSEGIPLSSPICTSWSPNNVSINLGAVGHNFIVVSTSNPCFLFILGVRLLSTYQYEIYEMQHLVLQNELSCISIPGQEIEQNKSNSSTSENNSSISSFQSGVDINKTFVIGTHRPSVEIWCFAPAGGITVVACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVLVGLRNGMLLRFEWPAEPSPSSPINMVDTALSSINLVNSGSNAFDNRNDLPSTLQLIAIRRIGITPVFLVPLDDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVRSIECPKGILFVAENSLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVLSSFRLERGETGKSMELIRIGSEQVLVVGTSLSPGPAIMSSGEAESCKGRLLVLCLDHVQNSDSGSMTFCSKAGSSSQKNSPFLEIVTYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATRWQGMVLKICPYLDRYFLASAGNAFYVCGFPNDNPQRVRRYAMGRTRHMITSLTAHFTRIAVGDCRDGIILFSYHEEEKKLVQLYSDPSQRIVADCILMDADTAVVSDRKGSIAVLCSDHLEDNASTECNLTLSCGYFMAEIAMSIKKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTMLGSIMIFIPLSREEYELLEAVQARLFLHHLTAPVLGNDHNEFRSRENRVGVPKILDGDMLTQFLELTSMQQKMILSSEPPDMVKPSLKPLLAPHVSVNQVVQLLERVHYALN 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02632 1366 Pfam CPSF A subunit region 934 1319 IPR004871 GO:0003676|GO:0005634
Cca03g02632 1366 Gene3D - 35 457 IPR015943 GO:0005515
Cca03g02632 1366 Gene3D - 497 894 IPR015943 GO:0005515
Cca03g02632 1366 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 19 1363 - -
Cca03g02632 1366 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g02632 1366 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 19 1363 - -
Cca03g02632 1366 Coils Coil 1366 1366 - -
Cca03g02632 1366 Gene3D - 1065 1238 IPR015943 GO:0005515
Cca03g02632 1366 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02632 Cca-Chr3 47686719 47700496 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02632 K12830 - gmx:100806799 2442.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02632 03 47686719 47700496 Cca03g02632 03 47686719 47700496 ECH