Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02629 ATGCGAAGAACCAGAAATATGAGACCAAACATCGTTTCCGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAGCATTCCATTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAATCATTTACTTGGTTTGTCTTTTGGTTGGATACGATTCCTTCGCCGAGGTTTGCTTCTTGCCGTCCGCAGTTGTATCGCGGTTTCAAGTTTACAGGATTTATACCTCCATTATTTTCCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTTTATGTCACTATTTTGTTGGCTACAAGCAATGCCATATTCCATCTTCTCATAGCACTGCTGGTGGCACACAATCCTTTTGTTACATATGATGATCTCATGAATCAGTGTGCAATAGGCTTCTCAGGGGTTCTATTTTCAATGATTGTTATAGAAACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTATTGGTAGTGTTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATTTTATCGGGGTTTGCTTATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAAGCCTCCTCATGGCTATCATCATGTGTGAGGCGTCCAAAATTTATTGTTTGCACCGGTGGAAATCCTTCAGGTTATATTCCTACACATACAAGCCAAAATTCAACAACCAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCATCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGGCAGTAGGTTCCCTGGGACGGGAAGGACCCTTGGCTCTGGTCAAGGTCAAATGGGATCTCATCGGCATTCAGATTCAAACCTTCAAGCTAGACTTTTGGAGGATAGCAGTCCCAATAACCCTGTAGATTCATCCACTCGTAGTGCTACTCAACAGTTTTCAGAAGCAAGGCATTCAGTTGAGAATGTTGCCACAGCAACTGCAGGTGTTCCACAACATCAGGGGGCAGTTGCTTCGGAAGAGGGGATTAGAAAACTTGTATCGATGGGCTTTGATAGGACgcaggtggaagtggcgttggcagctgctgatggcaatctcaatgtggcagtggAAATACTCATGAGCCAGCAGGGTTGA 1245 0.4185 MRRTRNMRPNIVSEAGLPTRMNQWWESIPFLTSAVVVVCGIIYLVCLLVGYDSFAEVCFLPSAVVSRFQVYRIYTSIIFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSNAIFHLLIALLVAHNPFVTYDDLMNQCAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTSFYSSIEASSWLSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTTSGLLSGNIWRNLSSLMPQREVSTQSTEGSRFPGTGRTLGSGQGQMGSHRHSDSNLQARLLEDSSPNNPVDSSTRSATQQFSEARHSVENVATATAGVPQHQGAVASEEGIRKLVSMGFDRTQVEVALAAADGNLNVAVEILMSQQG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02629 414 SMART uba_6 374 411 IPR015940 -
Cca03g02629 414 Pfam UBA/TS-N domain 378 409 IPR015940 -
Cca03g02629 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 412 IPR015940 -
Cca03g02629 414 SUPERFAMILY UBA-like 367 413 IPR009060 GO:0005515
Cca03g02629 414 Gene3D - 331 414 - -
Cca03g02629 414 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Cca03g02629 414 MobiDBLite consensus disorder prediction 287 321 - -
Cca03g02629 414 Gene3D - 22 219 IPR035952 -
Cca03g02629 414 PANTHER DER1-LIKE PROTEIN, DERLIN 10 413 - -
Cca03g02629 414 MobiDBLite consensus disorder prediction 328 347 - -
Cca03g02629 414 PANTHER RHOMBOID-LIKE PROTEIN 15 10 413 - -
Cca03g02629 414 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Cca03g02629 414 CDD UBA_At3g58460_like 375 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02629 Cca-Chr3 47649208 47656235 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02629 - - gmx:100805745 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02629 03 47649208 47656235 Cca03g02629 03 47649208 47656235 ECH