Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02624 ATGGAACGTCAGGGTCATGATTATGCAGCTGCGTCTGCTATGGCATATGCTCAGCAACAGCGGCAAGCTGCTAATATGCAACAACAACAGCAGTTTGGATTTCATCCCCAGCATCAGCAGTTTCCTTCATCAATGCATGGTCCTCCTTTTATACCCCCAGGTCCTGGTCCTGCACACCCCCCTATGCAACAGTTCCCTTATCACCATGCCCTGCAGCAGCAACAGCAGCCACTTCCGCAATTACACCCTCATGCCCCTCCCCCACCTCATCTTCTTCTTCAGCAGCAGCACCAAGGGCCACCGGCATTCCCTTCACATTATCCTCCTCCGCTTGTTCCATCTCCATTTTATGATTCTGCTCCTCCCCCGGTTGCTCCCCCCTCTGATCCTGAGCTCCACAAGCGAATTGACAAGCTTGTTGAGTATGCGGTGAAAAATGGTCCTGACTTTGAAGCTATGATATGTGAAAAGCAGCGGGACAATCCTTCCTATAGTTTCCTCTTTGGTGGGGAGGGCCATGGTTACTACCGTTATAAGCTGTGGTTATCAACTCGTCCCCCTGGTGGCCCATTCAACCAGCCTTTTCCATCATCTTCTATGCCCATGATCCATCCCCCAAATCCAATGATGAATCCGTCTCCTCTAAATGCTTCTCCAATGAATCCTGCAGGAATTGGTTCTTCGCCTTCAATGCTAGGTCCACCTCCTTTCCAACAGTTCTATGATCAACAACACCACCATCAACATCCTCAGTCTTTTGGGCTTCCTGGTCGGCCTGAGTATGATCAGTCATCTAAATCGTTCAAAGGGCTCTCTGGGCCACTTCCATCGGATGTTGCAATGGAGCTCAGTAATGTTCTTAACAATCTGAATGGTACAAAAGAATCCATCAAAGGTGCAAAACTTTGGTTCATGCAGAGATCTCCATTTGCACCAGCCCTAGCAGAGGCTCTTAGAGATAGGGTCTTTGCATTGGATGATGTTGAGAGACAGTTACACATTATATACCTTGCCAATGACATCCTTTTTGACAGCTTAAATCGGAGGACAAGCAGTAATGACCTTGACAGTGAAGCTCTTGCCTTGAAACCTGTTTTGGGCTCCATGCTTGCAAGAATTTATCATAACCCACAAAGCAATGAGGAATACAGGAAAAGATTGCAGCAAATGGTGGAGTTCTGGGCTTCTAAAACAGTATATGATCAAGAGACTATATCTTTACTGAAGGGTGAGATGATTGGTGGTCCACAAACAAATCCTTTTCCTGGGGCTTTGAAGGATTTATCCTCTGCTTCTGCAGAATCAGTTACAGGATTGCTGCAGACACCTAATCATGTTGCCCAGCAGTGGCAACCGGATAGATTAGGCTCTGGTTCAAGTCTCTTAGATCAAGATCGTCCCGATAAACATGCAGCTCCAGCACAGTCACTATCAACACCCCTAGCAGTTCAGCAGTTTCTTCCAAATTCTGCTCCTACCAATGCCTTTCCTGGGTCCATGGCTATACCATCTTCTGCTCAACCAGCTAACCAAGCACCTGGTGCTCATTTATTGCCCACTCCATCAGCCAGCACCAGTGAACAATTGCCACCATATCCGTTATTCCCTCCTGGTCTCATTCCTGGAATGGTTAGAAAGATGCAGATTGGTAGTGGGGTCCCATATTCTCCTTTAAGCCCTTTGGATATTCCAACTATAATACCGCCATCAACTGTACCGCCATCAGAAATCCTTCAAAGAGTGTCAAAATTTTTCAAAGAAATTGGAGAGGTAAATCCTTCGGAGGGTCCTATGAATTCTGATTCCAGAGATGAAGATGATGAATTTGATAGAGAATATGAGAGGGATCCTCCAGTACGAAAGGGAGGTGCTTGCATACCTCCACCCCCAAACTTGCAGGTTGATCCAGAGACAGGAACCTATGCTGATGGGACTGTAGAACGAAAGCCAGGAGCCAGTGGCTCTGGCAGGTTGGGGCTTGGGGCCACAGCCAATCCCAATGAGGTGAGTCAGTATGATGATGTATATACCTCTTACAGGAAGCAGAGAAGCACCAATTACCATTCATCAATGAGTGCTAGAGCCGCAGCGAGATGA 2097 0.4716 MERQGHDYAAASAMAYAQQQRQAANMQQQQQFGFHPQHQQFPSSMHGPPFIPPGPGPAHPPMQQFPYHHALQQQQQPLPQLHPHAPPPPHLLLQQQHQGPPAFPSHYPPPLVPSPFYDSAPPPVAPPSDPELHKRIDKLVEYAVKNGPDFEAMICEKQRDNPSYSFLFGGEGHGYYRYKLWLSTRPPGGPFNQPFPSSSMPMIHPPNPMMNPSPLNASPMNPAGIGSSPSMLGPPPFQQFYDQQHHHQHPQSFGLPGRPEYDQSSKSFKGLSGPLPSDVAMELSNVLNNLNGTKESIKGAKLWFMQRSPFAPALAEALRDRVFALDDVERQLHIIYLANDILFDSLNRRTSSNDLDSEALALKPVLGSMLARIYHNPQSNEEYRKRLQQMVEFWASKTVYDQETISLLKGEMIGGPQTNPFPGALKDLSSASAESVTGLLQTPNHVAQQWQPDRLGSGSSLLDQDRPDKHAAPAQSLSTPLAVQQFLPNSAPTNAFPGSMAIPSSAQPANQAPGAHLLPTPSASTSEQLPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTIIPPSTVPPSEILQRVSKFFKEIGEVNPSEGPMNSDSRDEDDEFDREYERDPPVRKGGACIPPPPNLQVDPETGTYADGTVERKPGASGSGRLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAAAR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02624 698 MobiDBLite consensus disorder prediction 102 129 - -
Cca03g02624 698 MobiDBLite consensus disorder prediction 1 131 - -
Cca03g02624 698 MobiDBLite consensus disorder prediction 503 527 - -
Cca03g02624 698 MobiDBLite consensus disorder prediction 241 269 - -
Cca03g02624 698 ProSiteProfiles SURP motif repeat profile. 135 179 IPR000061 GO:0003723|GO:0006396
Cca03g02624 698 SMART surpneu2 133 185 IPR000061 GO:0003723|GO:0006396
Cca03g02624 698 MobiDBLite consensus disorder prediction 80 94 - -
Cca03g02624 698 MobiDBLite consensus disorder prediction 446 478 - -
Cca03g02624 698 Gene3D - 280 414 IPR008942 -
Cca03g02624 698 MobiDBLite consensus disorder prediction 46 62 - -
Cca03g02624 698 MobiDBLite consensus disorder prediction 15 44 - -
Cca03g02624 698 MobiDBLite consensus disorder prediction 589 674 - -
Cca03g02624 698 Pfam CID domain 282 406 IPR006569 -
Cca03g02624 698 Pfam Surp module 136 181 IPR000061 GO:0003723|GO:0006396
Cca03g02624 698 Gene3D Surp module 120 185 IPR035967 GO:0003723|GO:0006396
Cca03g02624 698 SUPERFAMILY Surp module (SWAP domain) 107 182 IPR035967 GO:0003723|GO:0006396
Cca03g02624 698 PANTHER SR-RELATED CTD ASSOCIATED FACTOR 6 125 696 IPR039037 GO:0006874
Cca03g02624 698 SMART 558neu5 282 413 IPR006569 -
Cca03g02624 698 ProSiteProfiles CID domain profile. 275 416 IPR006569 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02624 - - gmx:100816468 1065.83