Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02620 ATGAAATTCGGGTGTGCATTCAGAGAGTACCTGCAGGAAGAGCGAGAGTGGTTAGTGGACGATAAATGTGCCCACGTCGAATACATCAGATTGAAGAAAGTCTTGAAGAGTTGCCAGAAAGATACCTCTTTGGATAAGGACCAGTTATGTCACTGTCACTCTTGCCCATTGTGTGATCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATGTAGTGGTATACTTTAGTTCAAGAGTTAAGCATCTCCTTCATCTTCATATTTCAACAGGACTGCAGAGATATGTATTGCGCTTGCGCCAATGCTTCAAAAATGACAGGCAAGCCCTTGCCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTGAATGGGGAGAATTTCAAATCTAGGATGCATGCTGAACACATTGAACTTTTGCACTCACCTTGGCTAATTGAGTTGGGTGCTTTTTATCTGAATTCTAGTGGACTAGATGGTTGTGAGCTTGATGGAGTCTATGGTCACTTTTCGTGTGATATAAATATAACTAAAGCTGTAATGACATTGATTCTTCCTGATTCTATTAAGCTCGAGTATGATCTACATTGTGCAATTTGTCTGGATGTTATTTTCAACCCATATGCTTTGAGTTGTGGTCATATTTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGCTTTTTCAAGGCATTAAAGCTGCAAGTCCTGAGTCCAAGTGTCCTATATGCAGAGAGGTTGGGGTTTATTCTAAAGCTGTGCGTATGTTAGAACTTGATTTGCTGATGAAAAGAAGGTGCAAAGATTACTGGAAAGAGAGGCTAGCTGGTGAACGCTTTTATACTTTGGCCATCGAGACACCCGAGTATTACATCATTCTGAGTTCGTCCTTTGGCTTCACTGAGCTGCTATTGAGAAAGAAGCCCATCTTATTCCAAAAAGCATCTAGAAAGAACTTTGGAAGATCCGACAGTGTAGCGAAAAGCATCAGCATGTCAAAATTCTCTTCGTGGTTCTCTCGCTTGCGTTCTTCGTCTAAGCACTTCTACGGTTACCGCACCGCTCCCACCGTTTTCAACGGCCACCGAACCACCACCTCTCTGCTTCCTCTCGCTCTCGCTATTTCCGCTGGATCACTCGCTCTTCAACCACACTTCAACCCTTCCTTCTGCGACAACGATAGAGGTGTGACTGTTGGGGGCAAAGGTAGCACTCAACTAGTTGTTAAGGGATCCAAGAAAGAAATTCCGCCGGAGCTTCTTCAGGAGTTGAGAATTGTCTGTCAGGATGACATATCGCTTGATTACGATGAGAGATATAACCATGGAAAACCACAAAACAGTTTTCACAAGGCTGTCAATATCCCAGATGTGATTGTTTATCCGAGATCTGAAGAGGAAGTCTCCAAGATTGTCAAATTATGTAACGATCATAAGGTTCCTATTGTACCATATGGCGGAGCTACATCAATTGAGGGTCACACCTTATCCCCTCATGGAGGAGTTTGCATTGACATGTCATCAATGAAACCTTCACATAAAATTTTACCCCTCTTGTGA 1623 0.4251 MKFGCAFREYLQEEREWLVDDKCAHVEYIRLKKVLKSCQKDTSLDKDQLCHCHSCPLCDQQFFSELMKEASDVVVYFSSRVKHLLHLHISTGLQRYVLRLRQCFKNDRQALAQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIELLHSPWLIELGAFYLNSSGLDGCELDGVYGHFSCDINITKAVMTLILPDSIKLEYDLHCAICLDVIFNPYALSCGHIFCKSCACSAASVMLFQGIKAASPESKCPICREVGVYSKAVRMLELDLLMKRRCKDYWKERLAGERFYTLAIETPEYYIILSSSFGFTELLLRKKPILFQKASRKNFGRSDSVAKSISMSKFSSWFSRLRSSSKHFYGYRTAPTVFNGHRTTTSLLPLALAISAGSLALQPHFNPSFCDNDRGVTVGGKGSTQLVVKGSKKEIPPELLQELRIVCQDDISLDYDERYNHGKPQNSFHKAVNIPDVIVYPRSEEEVSKIVKLCNDHKVPIVPYGGATSIEGHTLSPHGGVCIDMSSMKPSHKILPLL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02620 540 Pfam RING-type zinc-finger 217 241 IPR027370 -
Cca03g02620 540 Gene3D - 427 530 IPR016167 -
Cca03g02620 540 ProSiteProfiles SPX domain profile. 1 150 IPR004331 -
Cca03g02620 540 SMART ring_2 217 265 IPR001841 -
Cca03g02620 540 Pfam FAD binding domain 477 532 IPR006094 GO:0050660
Cca03g02620 540 ProSiteProfiles PCMH-type FAD-binding domain profile. 473 540 IPR016166 GO:0071949
Cca03g02620 540 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Cca03g02620 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 300 IPR013083 -
Cca03g02620 540 SUPERFAMILY RING/U-box 209 268 - -
Cca03g02620 540 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Cca03g02620 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 301 - -
Cca03g02620 540 SUPERFAMILY FAD-binding/transporter-associated domain-like 440 532 IPR036318 GO:0050660
Cca03g02620 540 CDD SPX_BAH1-like 2 145 - -
Cca03g02620 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 301 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02620 Cca-Chr3 47588218 47602344 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02620 K16275 - gmx:100781704 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02620 03 47588218 47602344 Cca03g02620 03 47588218 47602344 ECH