Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02612 ATGGACGCGGGACCATGGAGTTCTTCCTCCAAGATCAAGTCCCGTTCGCCCTTCCAAGATCTCCTCCGCAGAAAAAACTCTCAAGAAAACTTGGACAGGTTCATCCCCAATAGGTCTGCGATGGACTTCGATTACGCTCACTACATGCTGACGGAGGGTAACAAGAAGGAAAAGGAGAAGGAGAACCGCGAGGTGACGTCCCCGTCGCGAGAAGCCTACTTGAAGCAACTCGCCGAGGCTTTCAACATGAACAGAACTCGAAGCTTGGCCTTCAAGAACAAACCCCCAACGCCGGTTGAACTCATTCCCAACTCCATCCTTTCGCCTCCTCCTCCTTCCAAATCCTCTAAGCCCAGGCGCTACATTCCTCAGAGTTCTGAGAGGACTTTGGATGCTCCTGATATACTTGATGACTTTTACTTGAACCTGTTGGACTGGGGAAGCAGAAATGTTCTCAGTATTGCCCTTGGAAACACCGTGTATATATGGAATGCCGCTGATTGCTCAACGGCGGAACTTGTTACCGTGGATGAGGAAGATGGTCCCGTTACTAGCGTTTCCTGGGCTCCTAATGGGCGCGTCTTAGCCATTGGTCTGAACAATTCTCATGTCCAGCTCTGGGATGCTGATGCTTCTATGATGCTAAGGACACTAAGAGGTGGGCACCAAGCGAGAGTGGGTTCACTGTGTTGGAACAATCATATCCTCACCACTGGAGGGATGGACAGTAGGATTGTTAATAATGATGTTAGAGTGAGGTCTCATATTGTTGAATCTTATAGGGGGCATCAGCAGGAGGTCTGTGGGCTCAAGTGGTCTCCCTCAGGACGACAATTGGCGAGTGGAGGCAATGATAATGTTATTCACATATGGGACAGGTCTATGGTCTCTGCAAATTCACCGACCCATTGGCTTCACAGGTTTGAGGAGCATAGAGCTGCTGTGAAGGCACTAGCATGGTGTCCCTTCCAGGCGAATCTGCTAGCTTCTGGTGGAGGTGGGGGTGATCACTGCATTAAGTTCTGGAACGCCCATACAGGGGCTTGCTTGAACTCTGTTGACACAGGCTCGCCGGGGTGCGCTTTTCTGTGGAAAAAGAATGAGCGGGGGTTGCTTAGCTCGCATGGGTTTACCCACAACCAGCTCTCTCTTTGGAAATACCCTTCAATGGTGAAGATGGCAGAGCTCAAGGGTCATACCTCCAGGGTGCTGTTCATGGCTCAAAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGGGGATGAGACGCTGAGATTTTGGAATGTTTTTGGAACGCCACAGGCTTCCAAACCAGCGCCTAAAGCTGACACTGAGCCCTTTGCTCATGTGAACCGTATTCGTTGA 1365 0.5077 MDAGPWSSSSKIKSRSPFQDLLRRKNSQENLDRFIPNRSAMDFDYAHYMLTEGNKKEKEKENREVTSPSREAYLKQLAEAFNMNRTRSLAFKNKPPTPVELIPNSILSPPPPSKSSKPRRYIPQSSERTLDAPDILDDFYLNLLDWGSRNVLSIALGNTVYIWNAADCSTAELVTVDEEDGPVTSVSWAPNGRVLAIGLNNSHVQLWDADASMMLRTLRGGHQARVGSLCWNNHILTTGGMDSRIVNNDVRVRSHIVESYRGHQQEVCGLKWSPSGRQLASGGNDNVIHIWDRSMVSANSPTHWLHRFEEHRAAVKALAWCPFQANLLASGGGGGDHCIKFWNAHTGACLNSVDTGSPGCAFLWKKNERGLLSSHGFTHNQLSLWKYPSMVKMAELKGHTSRVLFMAQSPDGCTVASAAGDETLRFWNVFGTPQASKPAPKADTEPFAHVNRIR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02612 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 429 - -
Cca03g02612 454 SUPERFAMILY WD40 repeat-like 139 431 IPR036322 GO:0005515
Cca03g02612 454 MobiDBLite consensus disorder prediction 102 117 - -
Cca03g02612 454 Pfam WD domain, G-beta repeat 305 343 IPR001680 GO:0005515
Cca03g02612 454 Pfam WD domain, G-beta repeat 393 428 IPR001680 GO:0005515
Cca03g02612 454 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Cca03g02612 454 Gene3D - 85 431 IPR015943 GO:0005515
Cca03g02612 454 SMART WD40_4 211 249 IPR001680 GO:0005515
Cca03g02612 454 SMART WD40_4 301 343 IPR001680 GO:0005515
Cca03g02612 454 SMART WD40_4 389 428 IPR001680 GO:0005515
Cca03g02612 454 SMART WD40_4 169 208 IPR001680 GO:0005515
Cca03g02612 454 SMART WD40_4 253 292 IPR001680 GO:0005515
Cca03g02612 454 MobiDBLite consensus disorder prediction 435 454 - -
Cca03g02612 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 208 - -
Cca03g02612 454 MobiDBLite consensus disorder prediction 92 126 - -
Cca03g02612 454 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 452 - -
Cca03g02612 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 429 IPR001680 GO:0005515
Cca03g02612 454 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g02612 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Cca03g02612 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Cca03g02612 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Cca03g02612 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 452 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cca03g02612 454 ProSitePatterns Trp-Asp (WD) repeats signature. 415 429 IPR019775 -
Cca03g02612 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 165 233 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02612 Cca-Chr3 47494531 47496249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02612 232 429 Miscellaneous Gene Families AT5G08390 21.608 1.46e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02612 K03363 - gmx:100801495 778.089