Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02607 ATGGATTCCTCTTCCATCTATGCTGTCTCGCTCTTCCTCCTGCTCCTTCTCCCGCTCCACTCCGCATTCCCCCACAACTCCTCCGCCTCTGCCCAGATCAACTCCAACTCCATCCTCGTCGCGCTCCTCGATTCGCGCTACACCGAGCTCGCCGAACTCGTCGAGAAAGCGCTCCTCCTCCAGACTCTCGAACAAGCCGTCGGCCACCACAACATCACCATCTTCGCGCCTAGAAACCAAGCCCTCGAGCGCCACCTCGACCCCGAATTCAAACGCTTCCTCCTCGAGCCTCGCAACCTCAAGTCCCTCCAGACGCTCTTAATGTCACACATTCTGCCCACGCGAATCGCCTCGCACCACTGGCCCGCCGCCGACCTCCACCACCAGACGCTCTCCGACCACCGCCTGCATTTGACCACCAAACCCTCCGGCCATAAAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGCATCGAGCGCCTCATCGTCCCCCGATCCGTGCAGGAGGATTTCAACCGCCGCAGAAACCTCGCCGCCATCTCCGCGGTGCTTCCGGAGGGAGCACCGGAGGTCGATCCCCGCACTCACCGCTTGAAAAAACCCGCGCCGGTACCTGCTGGAGCGCCGCCGGTTCTCCCGATCTACGACGCCCTAgctccgggaccgtcgatcgcaccggcgccggcgccgggaccggGAGGAGCGCGGCACCACTTCAACGGCGAGCGGCAGGTGAAGGACTTCATACACACGCTCCTGCATTACGGAGGATACAATGAAATGGCGGATATTCTGGTGAACCTGACCTCGCTGGCCACCGAAATGGGAAGATTGGTTTCGGAGGGTTACGTTCTAACCGTTTTGGCTCCAAACGACGAAGCGATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCGGGCGCACCGGAGCAGATTATGTACTTTCACATTATTCCCGAGTACCAGACGGAAGAGAGTATGTACAATGCGGTTAGGAGGTTCGGTAAGGTTCGCTACGATACGCTGCGGTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCCTACCTCTTTGATCCTGATATTTACACCGATGGGAGAATCTCCGTCCAGGGGATTGACGGCGTTCTTTTCCCTCCTGAGGAGGAGGAAGAACGCACCCGCCGCACCACTCCACTTGTTAAGGTCGCCGCCAAACCAAGGAGAGGGAAGTTGCTGGAAGCCGCCTGTAGCATGTTTGGAGCTTTTGGACAAGTCTGCCAATGA 1332 0.5713 MDSSSIYAVSLFLLLLLPLHSAFPHNSSASAQINSNSILVALLDSRYTELAELVEKALLLQTLEQAVGHHNITIFAPRNQALERHLDPEFKRFLLEPRNLKSLQTLLMSHILPTRIASHHWPAADLHHQTLSDHRLHLTTKPSGHKTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGARHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYFHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLFPPEEEEERTRRTTPLVKVAAKPRRGKLLEAACSMFGAFGQVCQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02607 443 ProSiteProfiles FAS1/BIgH3 domain profile. 34 173 IPR000782 -
Cca03g02607 443 SUPERFAMILY FAS1 domain 235 403 IPR036378 -
Cca03g02607 443 Pfam Fasciclin domain 291 401 IPR000782 -
Cca03g02607 443 Pfam Fasciclin domain 46 175 IPR000782 -
Cca03g02607 443 Gene3D FAS1 domain 275 402 IPR036378 -
Cca03g02607 443 Gene3D FAS1 domain 38 175 IPR036378 -
Cca03g02607 443 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 441 IPR044654 -
Cca03g02607 443 SUPERFAMILY FAS1 domain 34 176 IPR036378 -
Cca03g02607 443 SMART fasc_3 297 402 IPR000782 -
Cca03g02607 443 SMART fasc_3 73 176 IPR000782 -
Cca03g02607 443 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 1 441 - -
Cca03g02607 443 ProSiteProfiles FAS1/BIgH3 domain profile. 256 399 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02607 Cca-Chr3 47465685 47468831 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02607 - - gmx:100818575 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02607 03 47465685 47468831 Cca03g02607 03 47465685 47468831 ECH