Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02600 ATGACCCGTTTTGGAGAGAAGCTCCGTTTGCGTTGGTTGCTACCGAAACCGACCCGTTTTCTCGCTCTTCTTTCTCTCTCTACTCTTCATCATCTCTGCAAGTCCCTCGCTCGCTTCCTACTCTCCCAAACCCTACCCTTCCTCGCAATGGACACCCTCTTCTCCGACTACATCTCCGACGACTTCGATTCCTCCTCCTCCCGCCCCCACCGCCGCTTCCTCCAGGACGACGAACGCGATTTCGGCCACGACCGGGTCTACCTCCTCCCCCACAGgtggtggtcggaagcggaaggtgaacgtggtggAGAGGGCGTTTTGTATACGGTGGCGTGCAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTGAGGAAGGAAGAGGACCGCCACAAAATTAGGTTTTCTTCCCGTCAGTATGCGTTGGTTCCCGAGGGAATTTGGTTGCGTGCTCTCAAACGGTATAATGACTTTAATAATGCAGTGAAAGATTTTGGAAGCCTCTCCTATGCGGAGGACTCTTTGCTGGATTTGTTCCCCTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTCCCTGGTAGCAAAGATAAGCCAAAAGGAAAATGCAGCTGAATTCTATGAGAAGGCTTGTGACATTTTCAATTCTGCATATGAATCTGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAGTTCTTCTTGAATGACAAAGGTAGGTTGCCAAACGATTCTACTGGTCAACCTGTAAAAGAGGTTGTTCTGGAGTTACAAGTTCATGGACTTCCAGATTCTATGAGCAGTAATGGGAGCAATGAGATGATTTTAGATAGGTCTCAGACGGAATGTTCTCATAGTGGCTCTGTTATAATGAATGGAAGCCCTGACAATGTGATCCCCTATGTAACAGAGACCAACTATTTTCGAGGCAGTAGCTATAAAGCAATTCGATCTTTGGGTTTGACAGGATTACAAAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTCTTCCTTGGAGATTACCGTAAAGAGATAAATTGTGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTACTTAGAAAGCTGTGGGTTCCTGGAGCAATGCCCATTGCACCAAGAACGTTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATGGCCAGCATGACTCCCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAATAGTTGATCTGTGCCAAGGTCAATTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACTACAATACGGACCATGACTTTGACAGTCGTAAGTACTGATGGGATTACATTGCCTTCTACAATTACGGTAACAGTGCCTGAACGTGGAACACTTAAGGATCTTATTGGGGCCTTAATTGCTTTTTGTTCCCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAAATTTTTCGAGTATACGAGGATCCATCTGATTTGTTAAGTGATATTAGAGATCAAGACAAAATTGTTGCTTACCGAATGCAGAAGTATAATGAAGCTAGTCTCTTGGTTGTTTTTGTGCAAGAACGTTTGGTGGAAAATACTGGGAAGGAGATGTTTGAAAACAAGTTGTTTGGTTTCCCCCTGGTAACAAGGGTGTCCGGTATTTCTTCTGGATATGATGTTCAAAGGGAGTTTCTGAAGTTAATGAAGCCATTTTTGATGCAAGCTGAAGATATATTAGATGAGTATGATAAGGATGATGGTGTTAATAAAAGGCTAAGTGAAGATGATGAATTGGGTGATACTACTAACTCTGCAGCAATAGCAAGTGATGCAGACTCAAACAGTGGAACAGAGGATGACATACATTGGTCAACTGACATTGAATTCTACTTGCAAGGAATAGAGAATATCAAGATAATATTGAACAAACCATTACCAGTCACAATGTTTCCCAGAAAGCTGGAGATAGTTGTCTTGTGGTCAGATAAGATGCTTAAAATGTATGATACGTACCTGCTTGACTCATTGCCTGAGGTTTTCAAGCCCCAGCTATTTGCCACCAAGAGAATGCAAGAATCAGTTTCTAtttacaaatgccttgaagccttcttgaaagaggaacctcttGGGCCAGAAGATATGTGGTTAGTTGATATATGA 2391 0.4141 MTRFGEKLRLRWLLPKPTRFLALLSLSTLHHLCKSLARFLLSQTLPFLAMDTLFSDYISDDFDSSSSRPHRRFLQDDERDFGHDRVYLLPHRWWSEAEGERGGEGVLYTVACNSDSDSEILLHLRKEEDRHKIRFSSRQYALVPEGIWLRALKRYNDFNNAVKDFGSLSYAEDSLLDLFPLQVKIFVSWETSSLVAKISQKENAAEFYEKACDIFNSAYESVHIWDFSGQTTQFFLNDKGRLPNDSTGQPVKEVVLELQVHGLPDSMSSNGSNEMILDRSQTECSHSGSVIMNGSPDNVIPYVTETNYFRGSSYKAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINCENPLGMNGELALAFGDLLRKLWVPGAMPIAPRTFKMKLANFAPQFSGYGQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIIVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVVSTDGITLPSTITVTVPERGTLKDLIGALIAFCSLRDDETLLVAEIYKNKIFRVYEDPSDLLSDIRDQDKIVAYRMQKYNEASLLVVFVQERLVENTGKEMFENKLFGFPLVTRVSGISSGYDVQREFLKLMKPFLMQAEDILDEYDKDDGVNKRLSEDDELGDTTNSAAIASDADSNSGTEDDIHWSTDIEFYLQGIENIKIILNKPLPVTMFPRKLEIVVLWSDKMLKMYDTYLLDSLPEVFKPQLFATKRMQESVSIYKCLEAFLKEEPLGPEDMWLVDI 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02600 796 MobiDBLite consensus disorder prediction 667 694 - -
Cca03g02600 796 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 324 339 IPR018200 GO:0004843|GO:0006511
Cca03g02600 796 SUPERFAMILY Cysteine proteinases 321 794 IPR038765 -
Cca03g02600 796 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 793 - -
Cca03g02600 796 Gene3D Cysteine proteinases 310 543 - -
Cca03g02600 796 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 793 - -
Cca03g02600 796 Pfam Ubiquitin carboxyl-terminal hydrolase 323 767 IPR001394 GO:0004843|GO:0016579
Cca03g02600 796 MobiDBLite consensus disorder prediction 676 691 - -
Cca03g02600 796 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 323 796 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02600 Cca-Chr3 47409211 47416820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02600 - K21343 gmx:100791802 1264.21