LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g02591	ATGGATCCGGCCACGACGCCGCTCGGCCAAATGCTATTGGAGGAGATCACTCCCGTCGTGATGCTCCTTTCAACTCCCTCCGTCGAACAAGCGTGCCTCAAGAACGGCCTCTCCTTCCTCCAGACGCTAACGCCGTTCTGCTCCTTCAACAACATTGACGTGCCCGTTAGGACCGCCAGTGACCAGCCCTATCGCCTTCACAAGTTCAAATTACGCTTGTTCTATGCTTCTGATGTCAGGAAGCCTGATTTGATGGTAGCTAAAGAGCAATTGAAGCAAGTTATTACAGAGGCAGGGGATAAAATGTTTTCCGAGTCGCGTTCAGATGTGCTGAAAATTAATCACGAACTTTTGAGTTCTGAATACCAAAATACACCATCCTGGTTTCAGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCCGTGATATGTCTGCTAGCTGTTTCTTCAAAGGATGAACAGCCTATCAACAGATTTGTTGACCTTTTTAATACCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAAATTTCAAAGCATTACTTGTTAGTGCATGATAATCAAGATGGCTCTACAGACAGAGCAAGTAAAATATTCACAGAAATGAGGAATACATTTGGTACAATTGACTGTTCGTTGCTTTGCATTAATTCTTCCCTGGATGCTCCAATCAAACATCAAGATAATCCTTGGGCTTTGTATATAAGTGATGCCTCACCTACTCCTAGTCAAGATCTTGGTTGCTTTCTCAATATTGATGATATCAATGAGATCAAAGATCTAATGCAAGATTTGTCATCTAAGCACATCATTCCAAATATGGAGCAAAAAATTCGTGTACTCAATCAACAGGTTTCTGCAACACGAAAAGGGTTTAAAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGACGGTGCAGATTCTCTCAACGGTCCTACGTATAACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGGGATTATGAACTTGCTTTGTCAAATTATCGCTTAATTTCCACAGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACATACTTCATGTTGGATCAATCAAGAAAGGAAGCTGAGTATTGCATGGAAAATGCTTTTACCACATATTTAAAACTTGGATCATTGGGTCAGCTAAATGCAACACGGTGTGGTCTGTGGTGGATAGAAATGTTAAAGGCACGTGATGAATATAAGGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAAGCATCACACTGCTACTTGTTGTCTAAACCCTCCATGTTACGCAAATATGGATTTCATCTAGTGCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACATGCAATTCGAACATACAAAAGTGCTCTTTCTGTTTTCAAAGGAACTACTTGGAGTTATATCAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTGGCTGTCAAGCATATGATGGAAATCTTGGCTTGTAGCCACCAGTCCAAGACAACACAGGAATTATTCCTGGGTGACTTTCTTCAAATTGTGGAGAAAACTGGACGGACATTTGAGGTAACAAAACTTCAATTGCCTATAATCAACATCTCTTCTCTCAAGGTCATTTTCGAAGATTACCGAACTTTTGGATCACCTTCAGCTGTTAATACTAGAGAAGGCTTGTGGCATTCCTTGGAGGAAGAAATGCTACCATCATTCTCTGCTGCCAAGACTAATTGGTTGGAGTTGCAATCAAAGCTTATCTCCCAAAAGAACATTCAATCCAATGTTTGTGTTGCAGACGAGGCTGTGAAGGTGAATATTGAATTCAAAAATCCTCTGCAAATCTCAATTCCTATATCTGGTGTTACACTCATATGCAAGCATTCTGCTAGTAGTGATGAAGTTAAATATGAAAATGAGTCAAGTGTGGAGAAAGATGATGAGGCTGACCACTTCAGGAATATGAGCTCTGACAATTCCTCATTTATGGTGTCTGAGGTTGATTTCTTACTAGGAGGTGGTGAAACAACCATGATTCAACTATCAGTTACTCCCAGGGCAGAGGGTAATCTTGAAATTCTTGGTGTTAGGTGGAAACTGTCGGGTACAATAGTTGGCTTTCACAACTTTGAGTTGAGCCTTCCAAAGAGGAATGCTGCAAAAGGAAGAAGGAAAACAAAGTGCCTGCCAAATGAGAAATTTAAATTTGTGGTGATTAAGAGCATACCCAAGCTTCAGGGTTCCATTCACCCTTTACCTGGAAAAGCATATGCTGGAGATTTGCAGCGACTTGTTTTGGAATTGAGGAATACATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGATTCCTGATAATTGGGGAGCAGGAAAATATGAAGTCAGAGTTTCCTGCATGCTTAAGAAAGAATACTGATTCAGTACAATGTGATGCACATGCTAATTCTATGTCCGACACAGTCTTTTTGTTTCCAGAGGGCACTTCAGTTCAAGGTGAAATACCCTTATTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGATATATCACTTTACATGAGCATATATTATGAGATGGTAGATGTATCAAGTGTCATCAAATATCGTACGCTTCGCTTGCATTACAATGTGCAGGTGTTACCATCATTGGATGTCTCATTTCAAATCAGTCCTTCTCGATTAAGATTACAAGAATTTCTTGTTAGAATGGATGTTGTTAACAAGACTACCTCAGAAAGTTTCCAAGTTTATCAGTTGTCGTCAGTTGGTCAACACTGGGAAATCTCATTACTTCAACCTCCTGATACTTTTTTTCCTTCACAATCATTGATGGCTGGTCAAGCAATATCATGTTTCTTTACATTAAAGAATTCAAGGAGGTTTTCGGCATTGGAGGACAACATATCTACATTGCCTGTCAGAAGTGATGTAAGATTGGTACCCCAAAGCAGTGATGATTTAGTTTATGATATAAACAGTGCTCCTTTGATCAATTTTCACCATTATGAAAGATTGCAGCAGGAAGTTTCATATAAGGGCGACTTAAATACTGTTGATTTTGTATTAATCTCTTGGCCATTCAAGAGTAACAACGATCCTGGTTTTTCTGATCCTCCTCATGTTATGTCTCATCATGCATGTCACTCCAGTATTGCTAGCTCTGGCCCTATTTCATGGCTAGTGGATGGACCTCAAACCTTGCATCATGATTTCTCTGCATCGTTCTGTGAAATAAGTCTGAAGATGCATCTTTACAATTCATCTGGTGCCACTGCTTTTGTACGCATTGACACCTTAGATTCTGCTGGTAATGGTGGACATAAGAACAGTATAAATGTGGTTCAATCAACAACTCCTGATAACCAAGCAGGGTGGCATGATATCACACCAGTGAATAATGAACACAAAGTCACATCCCCAAAGGTTTTTGAAACCCAACCAGGAAAGGCACTATCTTTTGAAAGTGTCTCCCCTTATATTTGGTCTGGATCAAGCTCAACCAATCTCCACATTGAGGACTTCCATCCAATGGTCAGGGAGACAGTGATGAAACGAGGCAGCATTCAGGCAAGTGCCAGGGCTATAAACACTATATTACCGTGCTCCAGTCCACTTGAAAAATTGGCTAGCGTATTTGGACTGGCCAAGTTTGGGAAAGGAAGTTGTGGGGTGCACGCGTATGCAGCGCAAGAATTGGATACAGTTAAACTTAAACCAAATGTTTTGAGCGTACTTCATGGAGCATTGGAGCAATTGTTCTTTCTAATTTTTTCTACATTTGATCGGAAACAGTTTAGAGTGCTTAGTTTTATTACTGTTGCAAAGTTGAAGAGAGCAAGACGCTTCACAATTCACAAAGCGAATGCAGTGAAGGACCTTCGCTCCAGAATGGAAGCTGACGTGGCACTCGCTCTCCAGATAGCGAAGCGCGTCAAGCTTCAACTCGGAACACCGCGAGACCGTTGA	4128	0.4067	MDPATTPLGQMLLEEITPVVMLLSTPSVEQACLKNGLSFLQTLTPFCSFNNIDVPVRTASDQPYRLHKFKLRLFYASDVRKPDLMVAKEQLKQVITEAGDKMFSESRSDVLKINHELLSSEYQNTPSWFQFLNKELVRVASFSDHEAFDHPVICLLAVSSKDEQPINRFVDLFNTNKLPSLLNDGAMDPKISKHYLLVHDNQDGSTDRASKIFTEMRNTFGTIDCSLLCINSSLDAPIKHQDNPWALYISDASPTPSQDLGCFLNIDDINEIKDLMQDLSSKHIIPNMEQKIRVLNQQVSATRKGFKNQIKNLWWRKGKEDGADSLNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYLKLGSLGQLNATRCGLWWIEMLKARDEYKEAATVYFRICGEDILHSAVMLEQASHCYLLSKPSMLRKYGFHLVLSGEQYKKCDQIKHAIRTYKSALSVFKGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMMEILACSHQSKTTQELFLGDFLQIVEKTGRTFEVTKLQLPIINISSLKVIFEDYRTFGSPSAVNTREGLWHSLEEEMLPSFSAAKTNWLELQSKLISQKNIQSNVCVADEAVKVNIEFKNPLQISIPISGVTLICKHSASSDEVKYENESSVEKDDEADHFRNMSSDNSSFMVSEVDFLLGGGETTMIQLSVTPRAEGNLEILGVRWKLSGTIVGFHNFELSLPKRNAAKGRRKTKCLPNEKFKFVVIKSIPKLQGSIHPLPGKAYAGDLQRLVLELRNTSEFPVKNLKMKISHPRFLIIGEQENMKSEFPACLRKNTDSVQCDAHANSMSDTVFLFPEGTSVQGEIPLLWPLWFRAAVPGDISLYMSIYYEMVDVSSVIKYRTLRLHYNVQVLPSLDVSFQISPSRLRLQEFLVRMDVVNKTTSESFQVYQLSSVGQHWEISLLQPPDTFFPSQSLMAGQAISCFFTLKNSRRFSALEDNISTLPVRSDVRLVPQSSDDLVYDINSAPLINFHHYERLQQEVSYKGDLNTVDFVLISWPFKSNNDPGFSDPPHVMSHHACHSSIASSGPISWLVDGPQTLHHDFSASFCEISLKMHLYNSSGATAFVRIDTLDSAGNGGHKNSINVVQSTTPDNQAGWHDITPVNNEHKVTSPKVFETQPGKALSFESVSPYIWSGSSSTNLHIEDFHPMVRETVMKRGSIQASARAINTILPCSSPLEKLASVFGLAKFGKGSCGVHAYAAQELDTVKLKPNVLSVLHGALEQLFFLIFSTFDRKQFRVLSFITVAKLKRARRFTIHKANAVKDLRSRMEADVALALQIAKRVKLQLGTPRDR	1375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g02591	1375	Gene3D	Tetratricopeptide repeat domain	330	555	IPR011990	GO:0005515
	Cca03g02591	1375	Pfam	ER-Golgi trafficking TRAPP I complex 85 kDa subunit	171	520	IPR024420	-
	Cca03g02591	1375	PANTHER	TRANSPORT PROTEIN TRAPP	8	1226	IPR024420	-
	Cca03g02591	1375	SUPERFAMILY	TPR-like	431	552	IPR011990	GO:0005515
	Cca03g02591	1375	Pfam	Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit	639	830	IPR013935	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g02591	K20305		-	gmx:100809666	2193.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g02591	03	47275772	47297062	Cca03g02591	03	47275772	47297062	ECH