Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02571 ATGTACCATTGTACCTGTCTCCACATTAAACAAATACTCACCTTCTTCTCATTCTCAACCCTCTTCTTTTCTTCCCCTTATCTCTTACATCAACCACAAATGGAAGAGTCCAAATCCAGGTTCAACAGGATTTGCGTCTTCTGTGGAAGCAGTTCAGGGAACAAACCTACCTATCAAGAAGCTGCTGTTCAACTTGCTAGGGAGCTGGTGGAGAAAAGGATTGATTTGGTGTATGGAGGAGGTAGCGTGGGGCTGATGGGTCTCGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTAGGGGTTATCCCAACAAGTCTTATGCCAAGAGAGATAACAGGTGATCCTATTGGGGAAGTGAGAGCCGTATCTAATATGCACCAAAGGAAAGCCGAGATGGCCCGTCAAGCCGATGCCTTCATTGCCCTCCCTGGAGGATATGGAACCCTTGAAGAATTACTCGAAGTCATTACATGGGCTCAGCTTGGGATCCACTGCAAACCCGtgggcctgttaaatgtagatggattttacaattccttgttatctttcattgacaaggcagttgatgaaggttttatttcccctacggcacgtcgcattatagtctccgcacccacagccaaacaattgatGCTAGAACTTGAGGAACATGTTCCCGAGCAAGATGAGTTTGCGTCCAAGTTGGTGTGGGAAGAAAGACTGAATTACGTGACTGAATCGGAAGTTGCCATGTGA 741 0.3914 MYHCTCLHIKQILTFFSFSTLFFSSPYLLHQPQMEESKSRFNRICVFCGSSSGNKPTYQEAAVQLARELVEKRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPTSLMPREITGDPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHCKPVGLLNVDGFYNSLLSFIDKAVDEGFISPTARRIIVSAPTAKQLMLELEEHVPEQDEFASKLVWEERLNYVTESEVAM 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02571 246 TIGRFAM TIGR00730: TIGR00730 family protein 43 217 IPR005269 GO:0009691|GO:0016787
Cca03g02571 246 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG2 35 238 - -
Cca03g02571 246 SUPERFAMILY MCP/YpsA-like 40 213 - -
Cca03g02571 246 Pfam Possible lysine decarboxylase 86 213 IPR031100 -
Cca03g02571 246 Gene3D - 31 218 - -
Cca03g02571 246 PANTHER LOG FAMILY PROTEIN YJL055W 35 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02571 Cca-Chr3 47018529 47023233 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02571 K22522 - gmx:100792663 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02571 03 47018529 47023233 Cca03g02571 03 47018529 47023233 ECH