Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02563 ATGCCCCAATCTAATGGATCCATCCTCACGCGATCAGTGTGGTCCTCCAACCTCGAATCGGAGTTCAGCCTAATCCGATCCGTCATCGACTCGTTCCCCCTCATCTCGATGGACACTGAGTTCCCCGGCGTCGTGGTTCGCCCCGACGCCGGGGATCCCTCATTCAGGCACCGGCACCCCGCCGCTCACTACACCGTACTCAAAGCCAACGTGGACCGCCTCCACTTGATCCAAATCGGCCTCACTCTCTCCGACCACATGGGTAACCTTCCAACCCTAGGCTCCTCCAACGCCTTCATTTGGGAATTCAATTTCAGAGATTTCGATGTCGCGCGTGACGCCCACGCCCACGATTCCGTCGAGTTGCTGCGTCGCCAGGGCATCGATTTCGAGAAGAATCGCGAGTTCGGGATCGACTCGGTCCGGTTCGCGGAGCTGATGATGTCGTCCGGTTTGGTCTGCGATGACGCCGTGAGCTGGGTGACGTTTCACAGTGCCTATGATTTCGGATACTTGGTGAAATTGTTGACACAGCGCGCGTTGCCGGAGGAATTAGCAGAGTTTCTCCGACTTGTGAAGGCGTTTTTTGGTGAAAGGGTTTTTGATGTGAAGCACTTGATGAGGTTCTGTTCGAATTTGCATGGTGGGTTGGATCGGGTGTGCCAGTCTCTGAATGTGGAACGAGTTGTAGGGAAAAGCCATCAGGCCGGTTCGGATAGCTTGCTTACTCTGCACGCTTTTCAGAACATTAGACAAATGTATTTTGGCAAAGTTGATAGACTTGTTCAGTATGCTGGTGTTTTATATGGCTTGGAAGCATTTTGA 825 0.5309 MPQSNGSILTRSVWSSNLESEFSLIRSVIDSFPLISMDTEFPGVVVRPDAGDPSFRHRHPAAHYTVLKANVDRLHLIQIGLTLSDHMGNLPTLGSSNAFIWEFNFRDFDVARDAHAHDSVELLRRQGIDFEKNREFGIDSVRFAELMMSSGLVCDDAVSWVTFHSAYDFGYLVKLLTQRALPEELAEFLRLVKAFFGERVFDVKHLMRFCSNLHGGLDRVCQSLNVERVVGKSHQAGSDSLLTLHAFQNIRQMYFGKVDRLVQYAGVLYGLEAF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02563 274 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 3 273 - -
Cca03g02563 274 Pfam CAF1 family ribonuclease 13 138 IPR006941 -
Cca03g02563 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 273 IPR039637 GO:0004535|GO:0030014
Cca03g02563 274 Gene3D - 1 273 IPR036397 GO:0003676
Cca03g02563 274 SUPERFAMILY Ribonuclease H-like 11 271 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02563 Cca-Chr3 46930227 46931946 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02563 K12581 - gmx:100790027 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02563 03 46930227 46931946 Cca03g02563 03 46930227 46931946 ECH