Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02562 ATGACGCTTGGCTCTGCAGGATCCAGTGTTGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAACTTGAAAAGGGAGAAAAAGGAATTGGAGATGGTACAGTTAGCTATGGAATGGATGATGGTGATGATATTTTCATGCGCTCTTGGACTGGCACCATTATTGGCCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCACCAAGTGTTCGATTTCATTCACGGATTAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGACTTCTTGCAAATTGGCAACGAAGGTTTACGATGGAAGATATATTGACCCAGCTGAAGAAGGAAATGGCTGCTTCACATAACCGCAAGCTTGTGCAGCCCCCTGAAGGTACTTACTATTAG 441 0.415 MTLGSAGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIFMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQLKKEMAASHNRKLVQPPEGTYY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02562 146 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
Cca03g02562 146 PANTHER - 9 140 - -
Cca03g02562 146 Pfam Ubiquitin-conjugating enzyme 44 132 IPR000608 -
Cca03g02562 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Cca03g02562 146 SMART ubc_7 16 146 - -
Cca03g02562 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 140 - -
Cca03g02562 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02562 Cca-Chr3 46922361 46927080 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02562 K10704 - gmx:100789495 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02562 03 46922361 46927080 Cca03g02562 03 46922361 46927080 ECH
Cca03g02562 03 46922361 46927080 Cca02g00611 02 13546179 13549755 PCT