Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02559 ATGCAAGACTTTTCCTCCTCAGACGATTCACTCCCCAAGAGGTTAGGAGGCAAGGTAGCACTCATAACCGGAGGAGCCAGTGGCATTGGCGAAGCCACAGCGAGGCTTTTCCTCCGCCACGGTGCCAAGGTCGTCATCGCCGACATCCAAGACAACCTCGGACACTCCCTCTGCCGCAACCTAAACTCCGACAACATTTCCTATGTTCACTGCGACGTCACCAACCATAACGACGTCAAAACCGCCGTCAACGCCGCCGTCTCGCGGCACGGCAAGCTCGACATCCTCTTCAGCAACGCCGGAATCGGCGGCAGTCTGGAGCCTTCCATCATGGCCCTTGATCCCGTGGAGTTGAAGAGCGTTTTCGAGGTGAACGTGTTCGGCGCTTGTTACGCGGCGAAACACGCCGCTGAGGTGATGATTCCGAGAAAGAGAGGGAGCATCGTGTTCACCTCGAGCGCTGTTTCGGTGACTCACCCGGGTTCGGCGCACGCGTACACGGCGTCGAAGCACGCGGTGGTGGGTCTGATGAAGAACCTGTGCGTGGAATTGGGGAAGCATGGGATCAGAGTTAACTGCGTTTCGCCGTACGCGGTGGCCACTCCTATTCTGACACGTGGCATGGGGATATCGAGGGAGAGAGCAGAGAAAGTGTTCTCTGAGGCAGGGAACTTGAAGGGAGTGATTCTAAAGGAAGAGGATGTGGCAGAAGCAACTTTGTTTCTGGCTAGTGATGAGTCAAAGTACGTGAGTGGTGTTAATCTTGTTGTGGACGGAGGCTACAGTGTCAACAATACTGCTTCTGCTGAAGAAGCTTTCAGAAAGTTTTCTGCTAATTAG 840 0.5476 MQDFSSSDDSLPKRLGGKVALITGGASGIGEATARLFLRHGAKVVIADIQDNLGHSLCRNLNSDNISYVHCDVTNHNDVKTAVNAAVSRHGKLDILFSNAGIGGSLEPSIMALDPVELKSVFEVNVFGACYAAKHAAEVMIPRKRGSIVFTSSAVSVTHPGSAHAYTASKHAVVGLMKNLCVELGKHGIRVNCVSPYAVATPILTRGMGISRERAEKVFSEAGNLKGVILKEEDVAEATLFLASDESKYVSGVNLVVDGGYSVNNTASAEEAFRKFSAN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02559 279 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Cca03g02559 279 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Cca03g02559 279 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Cca03g02559 279 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Cca03g02559 279 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Cca03g02559 279 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Cca03g02559 279 Gene3D - 4 275 - -
Cca03g02559 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Cca03g02559 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Cca03g02559 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Cca03g02559 279 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 10 269 - -
Cca03g02559 279 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 10 269 - -
Cca03g02559 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Cca03g02559 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 263 IPR036291 -
Cca03g02559 279 Pfam Enoyl-(Acyl carrier protein) reductase 24 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02559 Cca-Chr3 46881745 46882895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02559 15 263 Acyl Lipid Metabolism Gene Families AT1G62610 31.008 1.04e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02559 - - gmx:100803447 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02559 03 46881745 46882895 Cca03g02559 03 46881745 46882895 ECH