Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02557 ATGGCAAGTTCAACCTCTGCACTCAACAGAAGGCTAGAAGGAAAAGTTGCGCTGATAACAGGAGGAGCTAGTGGCATCGGAAAACGCACTGCGGAAGTATTCGCCGAACACGGAGCGAAAGTAGTGATCGCTGACATCCAAGACGAACTGGGCCATTCCGTTGTTCAGTCCATTGGGCCATCAACATGTTCTTACGTCCATTGTGATGTCACCGATGAAAACCAAGTCAAAAATGCTGTGGACAAAGCTGTAGAAACCTATGGGAAACTAGACATCATGTTCAACAACGCTGGCATAGTTGATCCCAACAAGCACCGAATCATTGACAACGAAAAAGCTGATTTTGAACGTGTACTCAGCGTCAATGTCACAGGTGTTTTCCTAGGGATGAAGCACGCGGCGCAGGCGATGATCCCATCACGCAGTGGTAGCATTATCTCTACGGCTAGCATAAGCTCTTACGTTGGTGGTGCAGCCTCGCATGCGTATTGTTGCGCTAAGCATGCGGTGGTTGGTCTAACTAAAAATGCAGCGGTTGAGCTTGGACAGTTCGGAATAAGGGTGAATTGTTTGTCACCTTACGCTCTTGCTACTCCCTTGGCCACCAAGTTCGTTGGAGCCGATGATGAGGGGCTGGAGAGTATCATGAGCTCGCTCGCTAATCTCAAGGGTGTCACCCTTAAAACGGATGATGTGGCTAATGCCGCACTTTACTTTGCTAGTGATGATTCTAGGTACGTCAGTGGCCATAATTTGCTCATAGATGGAGGCTTCAGCATTGTCAATCCTTCCTTTCACATGTTTCAGTACCCACAGTCGTGA 822 0.483 MASSTSALNRRLEGKVALITGGASGIGKRTAEVFAEHGAKVVIADIQDELGHSVVQSIGPSTCSYVHCDVTDENQVKNAVDKAVETYGKLDIMFNNAGIVDPNKHRIIDNEKADFERVLSVNVTGVFLGMKHAAQAMIPSRSGSIISTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATKFVGADDEGLESIMSSLANLKGVTLKTDDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFHMFQYPQS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02557 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Cca03g02557 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Cca03g02557 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Cca03g02557 273 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Cca03g02557 273 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Cca03g02557 273 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Cca03g02557 273 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Cca03g02557 273 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Cca03g02557 273 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Cca03g02557 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 261 IPR036291 -
Cca03g02557 273 Gene3D - 2 269 - -
Cca03g02557 273 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 5 270 - -
Cca03g02557 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Cca03g02557 273 Pfam Enoyl-(Acyl carrier protein) reductase 21 259 - -
Cca03g02557 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02557 Cca-Chr3 46842655 46844870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02557 8 258 Miscellaneous Gene Families AT4G05530 32.941 1.41e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02557 - - gmx:100802915 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02557 03 46842655 46844870 Cca03g02557 03 46842655 46844870 ECH