Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02554 ATGGCAATTGGTTCTCCCATTCACTTCACAATAATACTATTTTCTCTATTTTCGGTGCCTGCATTGGGCTATACTTTTGCCCCCACCATACCCAGATTTCCTTCTTCAGCAATTCGAGCAGACCTAAAACAACGTTCAGGTTCAACCCAAAATGGGCTTTACAGAACAAAATTCTTCACCCAAACACTCGATCACTTCAGTTTTAATCCCCAGAGCTACCAAACTTTTCAACAAAGATATCTCATCAATGATACTTATTGGGGTGGTGCCAAGAAGAATGCTCCAATCTTTGTCTACACAGGAAATGAAGGCAACATAGAATGGTTCACACAGAACACAGGCTTTATGTTCGATAATGCTCCTTCTTTTCAAGCCCTTTTGGTTTTTATTGAGCATAGATTTTATGGAAAATCAATACCATTTGGGGGAAACAAGACGGTTGCATATGCAAATTCAAGCACACTTGGGTATCTGAGCTCCACGCAGGCATTAGCTGATTATGCCACTCTCATCATTGATCTGAAGAAGAATTTGTCAGCAACTGATTCCCCCGTTGTAGTGTTTGGAGGATCCTATGGAGGAATGTTGGCGGCGTGGTTCAGGCTGAAGTATCCACACGTTGCAATTGGAGCTCTAGCATCCTCTGCTCCAATTCTCCATTTCATGAATTTGGTTTCGCCAGATATCTTCTTAACCATCGTCACACAAGACTTCCGGAAGGAGAGTGAGAATTGTTACAAAGTGTTAAAGGGGTCTTGGAAGTTAATAGGCGACACGGCTATGAAACCCGGAGGACTGAAACTGCTACGGAAAGCATTCAGAGTATGCAAGAATGACGATTTTGGGGAAGGTTCTTTGATAGGTTGGCTTCGGACGGCGTGGATTTATGCAGCAATGACAGATTATCCCACGCCATCCAATTTCCTCAGTCCCCTACCGGCATATCCCGTAAAAAAGATATGCGAGGCCATTGACAGCTCAGTGAGGAAAAATAATACATTAGACAAGTTGTATGCTGCAGCGAATGTGTACTACAACTATAGTGGCACTGCTTCGTGTTTCAATTTGGACGACGATTCAGATCCTCACGATCTTGGAGGATGGCAATGGCAGGCGTGTACGGAGATGATAATGCCCGTAGGTGGAAGCAATAAGGAGAGCATATTCCCAGAATATGATTGGTCATACCAAGACAGAGTCGATGCCTGTTCCTTTTTCTACAACGTTACGCCAAGACCACATTGGATTACAACTGAGTTTGGTGGCCATGCTATTGAAAGAGTTCTCAAAAGGTCTGCCAGCAACATTATATTCTTTAATGGATTAAAGGATCCTTGGAGTGGCGGAGGGGTGTTAAAGAGTATATCAAAAACATTAGTTGCTATCGTTGCAAAAGAAGGAGCTCATCATGTAGACCTAAGGTACTCGAGTAAGGAAGATCCGAAGTGGCTTAAAGATGTTAGGAAACAGGAGTTAAATATCATAACAAGTTGGATCTCACAATACTATCGAGACCTAAATTCCAATTACTAA 1533 0.426 MAIGSPIHFTIILFSLFSVPALGYTFAPTIPRFPSSAIRADLKQRSGSTQNGLYRTKFFTQTLDHFSFNPQSYQTFQQRYLINDTYWGGAKKNAPIFVYTGNEGNIEWFTQNTGFMFDNAPSFQALLVFIEHRFYGKSIPFGGNKTVAYANSSTLGYLSSTQALADYATLIIDLKKNLSATDSPVVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILHFMNLVSPDIFLTIVTQDFRKESENCYKVLKGSWKLIGDTAMKPGGLKLLRKAFRVCKNDDFGEGSLIGWLRTAWIYAAMTDYPTPSNFLSPLPAYPVKKICEAIDSSVRKNNTLDKLYAAANVYYNYSGTASCFNLDDDSDPHDLGGWQWQACTEMIMPVGGSNKESIFPEYDWSYQDRVDACSFFYNVTPRPHWITTEFGGHAIERVLKRSASNIIFFNGLKDPWSGGGVLKSISKTLVAIVAKEGAHHVDLRYSSKEDPKWLKDVRKQELNIITSWISQYYRDLNSNY 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02554 510 Pfam Serine carboxypeptidase S28 61 489 IPR008758 GO:0006508|GO:0008236
Cca03g02554 510 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 7 506 - -
Cca03g02554 510 Gene3D Serine carboxypeptidase S28, SKS domain 226 393 IPR042269 -
Cca03g02554 510 Gene3D alpha/beta hydrolase 58 499 IPR029058 -
Cca03g02554 510 SUPERFAMILY alpha/beta-Hydrolases 125 473 IPR029058 -
Cca03g02554 510 PANTHER LYSOSOMAL PRO-X CARBOXYPEPTIDASE-LIKE PROTEIN 7 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02554 Cca-Chr3 46806764 46813464 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02554 K01285 - gmx:100781698 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02554 03 46806764 46813464 Cca03g02554 03 46806764 46813464 ECH