Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02547 ATGCTCCCAACCTTCACTACTTCCGCCTTCTTCTTTACGCCTTTTTTCTCTACACTCTTCTTTCTATTTACCCTGCTCCCTCACTCGCAAAACCCTAATTCCCCCCTCCAAACCTTCGCTTCTTCAATCTCCTCCTGCGCCATCTCCAATTTCACTTTCTCTGCTCCTTTCTTCGCTAGGATGGCAGGGGTGGAGAATAGCGACGGGAACGGGAGTGAACGGGAATTAGCGGGAACTAGCGATAACGGTTATGCGGAAGCTGCAGAGCCTAGTGGCTCTGCTGGTGGCGAAGGGAACGATGCCGTTTCGTATGCGAACGTACTGCGTTCGAGGAACAAGTTTGTCGAAGCTCTCGCGCTCTACGAGCGTGTCTTGGAGAGTGACGGCGCAAATGTGGAGGCTCTCATTGGGAAAGGGATATGCCTTCAGATGCAGAATAAGGGAAAGCCTGCGTTTGAGACTTTTTCCGAGGCTATCAAGCTGGATCCTCAGAATGCTTGTGCTCACACGCATTGCGGTATTCTGCACAAAGACGAGGGTCGCCTGGTGGAGGCTGCCGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACACAAAGCTTGCAGGGAACACTCAGGATGGAATTCAAAAATATTTTGAAGCCCTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTCAATTTCTATGAAAAGGCTGCATTAGAGAGGCCCATGTATGCTGAAGCATATTGCAATATGGGTGTGATCTTTAAAAATCGTGGTGATTTGGAATCGGCTATTACTTGTTATGAGAGGTGTTTAGCGGTTTCACCTAACTTCGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTGGGAACAAAGGTTAAATTGGAGGGGGACATCAACCGAGGTGTGGCTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTCGGGGTTGCGTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTGTTCTATGAACTTGCTTTTCACTTCAATCCACATTGTGCGGAAGCCTGTAACAATCTTGGAGTTATTTATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCCTTGTCAATCAAACCTAATTTTTCACAGTCATTAAATAACCTTGGTGTAGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAACCCGACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCGTGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAACCGCTTGCTTGCAATGAATTACATAGAGGAAGGACACGATGACACACTTTTTGAGGTTCACAGGGACTGGGGTAGGCGATTCATGAGACTATATCCACAGTACACATCATGGGACAACTCAAAAGATCCTGATCGACCCCTTGTGATAGGCTATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTTATTGAAGCACCCCTTGTCTATCATGACTCCTCCAAATTCAAAGTTATTGTTTATTCAGCAGTTGTCAAGGTAGATGCAAAAACAATGAGATTTAGAGAGAAAGTTTTAAGGAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGAAGGTTGCCAACATGGTTAGAGAAGATGAAGTTGATATTTTGGTAGAACTTACTGGTCATACTGCAAACAATAAATTGGGAATGATGGCATGTCGACCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTACCTACAATTGATTATAGAATTACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGATTACCAGAATGCTTCCTTTGTTACACCCCTTCCCCTGAGGCTGGTCCTGTTTGTCCTACTCCTGCTCTTTCCAATGGCTTCATCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCAAAGGTATTGCAGGTTTGGGCAAGGATACTACGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGTAAACCATTTTGCTGTGACAGTGTGCGACAGAGATTCCTTTCAACACTAGAGAAGTTAGGTTTAGAACCATTACGTGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCATACGCGGGAACAACAACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTACATGCGCACAATGTTGGTGTTAGTCTTCTTAGCACTGTTGGACTGGAGCATTTAATTGCCAGAAATGAAGATGAATACGTTGAATTGGCTCAGCAGTTGGCCTCCGACATTTCCGCACTACATAATTTGAGAATGAGTCTGCGAGATATCATGTCCAAATCCCCTCTCTGTGATGGTGCAAAATTTATCCTAGGTCTAGAGTCAACATACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTACAAGAAGTTGCTTCTGGTGACCTGTCAGATAAGAATCCTGAGTCAACAGGGATCGTAAACTCAACAGAGGGCAGTTCTGGTTCTGTCAAGGCCAATGGATTTAATACAATGCCTGTGTCAAAGCTCAACATACAGAGTTGCGAAGAAAACGGTGGGTCATTGAATCACAGTAGTAAACAAGGAAAGACGAGTTAA 2934 0.4298 MLPTFTTSAFFFTPFFSTLFFLFTLLPHSQNPNSPLQTFASSISSCAISNFTFSAPFFARMAGVENSDGNGSERELAGTSDNGYAEAAEPSGSAGGEGNDAVSYANVLRSRNKFVEALALYERVLESDGANVEALIGKGICLQMQNKGKPAFETFSEAIKLDPQNACAHTHCGILHKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNTKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALNFYEKAALERPMYAEAYCNMGVIFKNRGDLESAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYPQYTSWDNSKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDSSKFKVIVYSAVVKVDAKTMRFREKVLRKGGIWKDIYGIDEKKVANMVREDEVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILRAIPNSRLVVKCKPFCCDSVRQRFLSTLEKLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSTVGLEHLIARNEDEYVELAQQLASDISALHNLRMSLRDIMSKSPLCDGAKFILGLESTYRNMWHRYCRGDVPSLKRMELLQEVASGDLSDKNPESTGIVNSTEGSSGSVKANGFNTMPVSKLNIQSCEENGGSLNHSSKQGKTS 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 166 199 IPR019734 GO:0005515
Cca03g02547 977 SUPERFAMILY TPR-like 270 488 IPR011990 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat region circular profile. 452 484 - -
Cca03g02547 977 SMART tpr_5 350 383 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 418 451 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 452 485 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 132 165 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 207 240 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 98 131 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 241 274 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 316 349 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 275 308 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 384 417 IPR019734 GO:0005515
Cca03g02547 977 SMART tpr_5 166 199 IPR019734 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 132 165 IPR019734 GO:0005515
Cca03g02547 977 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 93 911 - -
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 418 451 IPR019734 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat region circular profile. 384 416 - -
Cca03g02547 977 SMART sel1 384 415 IPR006597 -
Cca03g02547 977 SMART sel1 350 381 IPR006597 -
Cca03g02547 977 SMART sel1 241 272 IPR006597 -
Cca03g02547 977 SMART sel1 452 483 IPR006597 -
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 241 274 IPR019734 GO:0005515
Cca03g02547 977 MobiDBLite consensus disorder prediction 921 945 - -
Cca03g02547 977 Pfam Tetratricopeptide repeat 452 484 IPR001440 GO:0005515
Cca03g02547 977 Pfam Tetratricopeptide repeat 275 308 IPR001440 GO:0005515
Cca03g02547 977 Pfam Tetratricopeptide repeat 241 267 IPR001440 GO:0005515
Cca03g02547 977 Pfam Tetratricopeptide repeat 384 417 IPR001440 GO:0005515
Cca03g02547 977 MobiDBLite consensus disorder prediction 69 97 - -
Cca03g02547 977 Pfam Glycosyl transferase family 41 525 688 IPR029489 -
Cca03g02547 977 Pfam Glycosyl transferase family 41 705 884 IPR029489 -
Cca03g02547 977 Gene3D Tetratricopeptide repeat domain 97 211 IPR011990 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat region circular profile. 241 267 - -
Cca03g02547 977 SUPERFAMILY TPR-like 397 852 IPR011990 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 384 417 IPR019734 GO:0005515
Cca03g02547 977 Gene3D Tetratricopeptide repeat domain 212 277 IPR011990 GO:0005515
Cca03g02547 977 Gene3D Tetratricopeptide repeat domain 348 422 IPR011990 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 350 383 IPR019734 GO:0005515
Cca03g02547 977 Gene3D Tetratricopeptide repeat domain 278 346 IPR011990 GO:0005515
Cca03g02547 977 SUPERFAMILY TPR-like 100 324 IPR011990 GO:0005515
Cca03g02547 977 Gene3D - 522 698 - -
Cca03g02547 977 Pfam Tetratricopeptide repeat 420 445 - -
Cca03g02547 977 Gene3D Glycogen Phosphorylase B; 703 877 - -
Cca03g02547 977 MobiDBLite consensus disorder prediction 919 945 - -
Cca03g02547 977 ProSiteProfiles TPR repeat profile. 275 308 IPR019734 GO:0005515
Cca03g02547 977 ProSiteProfiles TPR repeat region circular profile. 275 307 - -
Cca03g02547 977 Gene3D Tetratricopeptide repeat domain 423 509 IPR011990 GO:0005515
Cca03g02547 977 Pfam Tetratricopeptide repeat 105 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02547 Cca-Chr3 46710738 46731432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02547 260 959 Glycosyltransferase AT3G11540 63.818 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02547 K09667 - gmx:100785784 1698.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02547 03 46710738 46731432 Cca03g02547 03 46710738 46731432 ECH