Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02546 ATGGACTCCATTGAAGTTAACTTCAGCATGCAGAGCCACACAGAGGTAAAACAAGGAGTCCACACCTACGTTGCTCAGTGGCCAATTTCCTCTCTAGCATGGTCAATGCGGCGCGACAAAAACCCTCGTTTCGCCATCGGTAGTTACTTGGAAGAATACACCAACAAAGTGGAACTGGTCCACTTCAACTACGACACGTTCAACTTCACCACCGACCCTCGTTTAGTCCTCGACCACCCTTACGCGCCAACGAACATCATGTTCTTCCCCTCGGAGGACGACACGAATCTCGACCTCATCGCCACTTCAGGCGACAACCTAAGACTATGGGAAATCCACGAAGACCACATTCAACTAAAGTCCCCACTGATTGGTAACAAAGTTAGCGATAACTCGGCTATAACCTCGTTCGATTGGGCTGTATTTGACACGCGTCTGGTGGCCACTTCGAGCGTGGACACGACGTGCACGATTTGGGACATCGAAAGGGAAGCAATGAAGGCGCAGTTGGTGGCACATGACAAGGAAGTGTATGACATCTCATGGGGCGGGTTTAATGTTTTTGCGTCGGTTTCTGGGGATGGTTCAGTGAGGGTGTTTGATTTGAGGGACAAGGAGAAATCGACGATAATTTATGAGAATCCGGTGCAGGATTGTCCTTTGTTGCGTTTGGAGTGGAACAAGAATGATCCAAGGTTCATGGGAACGGTTGGGTTGGACAGCAATAAGGTGGTGATATTGGATATTAGGCTACCAACAACGCCGTATATGGAGTTGAGTAAACATAGGACGTGTGTGAATGCGATATCATGGTCCCCTGATTTTGGACGCCACTTGTGCTCTGTTAGTGATGATGCCAGGGCTTTCATTTGGGAAGTCATGGACTCGGGGTTTCCATCAGGGAATGGTTCCGATGTGGAGCCTGTCATGTGGTACGCTTCATCTGCTGAAATCAACCACGTGCGTTGGTCCCCGCTGCAGATGGACTGGATTGCCCTTGCTTTCTTCAACAACTTGCAGTTACTCAAAGTTTAA 1035 0.4899 MDSIEVNFSMQSHTEVKQGVHTYVAQWPISSLAWSMRRDKNPRFAIGSYLEEYTNKVELVHFNYDTFNFTTDPRLVLDHPYAPTNIMFFPSEDDTNLDLIATSGDNLRLWEIHEDHIQLKSPLIGNKVSDNSAITSFDWAVFDTRLVATSSVDTTCTIWDIEREAMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKNDPRFMGTVGLDSNKVVILDIRLPTTPYMELSKHRTCVNAISWSPDFGRHLCSVSDDARAFIWEVMDSGFPSGNGSDVEPVMWYASSAEINHVRWSPLQMDWIALAFFNNLQLLKV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02546 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 210 IPR001680 GO:0005515
Cca03g02546 344 SMART WD40_4 163 201 IPR001680 GO:0005515
Cca03g02546 344 SMART WD40_4 120 160 IPR001680 GO:0005515
Cca03g02546 344 SMART WD40_4 252 292 IPR001680 GO:0005515
Cca03g02546 344 SMART WD40_4 207 248 IPR001680 GO:0005515
Cca03g02546 344 SMART WD40_4 70 111 IPR001680 GO:0005515
Cca03g02546 344 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Cca03g02546 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Cca03g02546 344 PANTHER WD REPEAT CONTAINING PROTEIN 10 344 IPR045159 -
Cca03g02546 344 SUPERFAMILY WD40 repeat-like 28 338 IPR036322 GO:0005515
Cca03g02546 344 Gene3D - 14 340 IPR015943 GO:0005515
Cca03g02546 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 293 IPR001680 GO:0005515
Cca03g02546 344 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 10 344 - -
Cca03g02546 344 Pfam WD domain, G-beta repeat 170 201 IPR001680 GO:0005515
Cca03g02546 344 Pfam WD domain, G-beta repeat 125 160 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02546 Cca-Chr3 46700061 46701533 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02546 K11805 - zju:107416321 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02546 03 46700061 46701533 Cca03g02546 03 46700061 46701533 ECH