Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02545 ATGATGCTATGGTTGATACGTGATCTAGTTGTAATTGAATGTGGGTGCTATATTGGCTCATATAATTTATCTAATCTGTTGATTGCACATTTACAAGTGTTTAAGAGTATTCCATTTGCTTCCTATTTGCCATGGCAGGCGTGTGCAATATATAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTTCCTATGCCTTGCTTATTCTTTGGAGGAGGATCCACTCAATTTCTAATTAGCCGTGATGGTGGGGGTTGGATAGATGCTGCAAAATTTTTGACTGGAGCATCAGCCGTTGGGAGCATAGCCATTCCTATAATCCTCAAGCACGCTCATATGATTGAGACAGGCGCAATGCTCATCGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTTTATGTTTCCACCAAGCCAACCTTGATGATGATTGGTAA 447 0.4049 MMLWLIRDLVVIECGCYIGSYNLSNLLIAHLQVFKSIPFASYLPWQACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIDAAKFLTGASAVGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQANLDDDW 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02545 148 Pfam Vacuolar protein sorting 55 47 142 IPR007262 -
Cca03g02545 148 PANTHER LEPTIN RECEPTOR-RELATED 46 147 IPR007262 -
Cca03g02545 148 PANTHER RH04491P 46 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02545 Cca-Chr3 46695454 46696971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02545 47 139 EF-hand Containing Proteins AT1G32410 58.065 1.19e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02545 - - ccaj:109791126 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02545 03 46695454 46696971 Cca03g02545 03 46695454 46696971 ECH