Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02538 ATGTCAGGGCGTGAGAAAGAGAAGGGCGTCAACGTTCAGGTCCTCCtccgttgcagGCCGTTTAGCGACGAAGAGTTACGAAGCAACGCACCGCAAGTCGTGACTTGCAATGAGTACAATAGAGAAGTCGCCGTGTCGCAGAGCATCGCCGGCAAGCACATCGACAGGGTTTTCACCTTCGATAAGGTTTTTGGTCCTTCTGCGCGGCAAAAGGATCTTTACGAACAAGCTGTTACTCCAATAGTTAATGAAGTTCTCGAGGGTTTTAATTGTACTATATTTGCGTATGGTCAAACTGGCACGGGAAAAACCTACACAATGGAAGGGGAATGCAAAAAGGCCAAGAGTGGTCCCAGAGGAGAGTTGCCTCCAGAAGCTGGAGTGATTCCTAGGGCTGTCAAGCAAATTTTTGACACACTTGAGAGCCAGAATGCGGAGTACAGTGTGAAGGTCACTTTTTTGGAACTGTATAACGAAGAGATTACTGATTTGCTTGCCCCAGAGGAGCTTTCTAAAGTTTCTTTGGAGGAGAAGCAGAAAAAGCAGTTGCCTCTCATGGAGGATGGTAAAGGTGGAGTTCTCGTGAGAGGTTTGGAGGAAGAGATTGTGACAAGTGCTAGTGAGATTTTTACTCTTTTGGAAAGAGGGTCTTCTAAACGACGAACTGCGGAGACTTTGTTGAACAAACAGTCTAGTCGGTCTCATTCGTTGTTTTCAATTACTATTCACATCAAGGAAGCAACCCCAGAGGGTGAAGAGCTGATAAAATGTGGTAAACTTAATTTGGTGGATCTGGCTGGGTCAGAAAATATATCTCGTTCTGGTGCTAGGGAGGGTCGTGCAAGGGAAGCTGGGGAAATTAACAAAAGTTTGCTTACTTTAGGGCGAGTGATCAACGCACTAGTTGAGCACCTGGGTCACATCCCTTACAGGGATAGTAAATTGACGCGTTTACTGCGTGATTCACTTGGGGGAAGAACCAAGACATGCATCATAGCCACAGTGTCTCCTGCTGTTCATTGCTTAGAGGAAACTTTGAGCACGCTGGATTACGCACACAGGGCAAAGCACATCAAAAATAAGCCCGAGGTTAACCAAAAAATGATGAAATCAACACTTATCAAGGATCTATATGGTGAAATCGAACGCCTTAAGGCAGAGGTTTATGCTACACGCGAGAAAAATGGAATCTATATTCCAAAGGAAAGATACTTGCAGGAGGAGAGTGAAAAGAAGGCTATGTCAGATCAAATTGAGCAGATGGGGGTCACAATAGAAACTCAACAAAAGCAACTTGAGGATCTACAAAACAAATACGTTGACCAAATTCGGCAGTGTTCTGATTTGAGCAACAAACTTGATAATACTGAGAAAAACTTGAATAAGACTAGCAAGGTGCTTGCCAGCACCGAAGATGAACTAAAGAAATGTCAGTATACCCTGAAAGAGAAAGACTTCATAATTTCTGAGCAGAGAAAAGCAGAAAATGCTCTTGCTCATCAAGCATGTGTTTTACGAGCTGATTTGGAGAAAGCTCTGCAGGATAACGCTTCATTATTTTTGAAAATTGGTAGAGAAGATAGATTGAACACTGATAACAGGGCTGTAGTGATCAATTTCCAAGCTGAGCTTGCTCAGCAGGTTGGTTCTCTTTGCAACACTGTTACAACATCATTGTCTGAACAGAATGAACATCTAGAAGGTGTGAAGAAGCTCTGTCATTCTTTTTTGGAGGTTCATGATAAGGCCGCTGTTGATTTGAAAAAGAAAGTGACATCTTTGAGGGCATTGTACATATCTCATATCGAGGCAGTGCAAAATGTTGTGCGCTTGCATAAGTCTAGCTCTGATGCTACTTTGGAGGAACTTTTATTGGCTATATCCTCTAATGGACATTCTATTGAAGAATTTCTTGCATCCGAGGCCACCGAAGCTGGTTCAATATTTGATGATCTTCAGAGTTCACTTTCAGCTCAGGACGGTGAATTGGCACTTTTTGCGAGGGAACTACGCAATAGATTCAGTCTCAGCCTTGAACAAATAAAGGATATCTCTGAGCGCTCTCAAGAATTTGTGGATAAGCTTTTTGAAGAATCAAAAAAGCTTGAAGACTTTGCATCACGGGCTGATCAAACACAAATGAAGAGCATTGATGAGTTTAAGAAAGCTTACGAGGAGCAATCAAAATCTGATACAGAGAAACTGATCGCTGATATGACTAATTTAGTTTCTGATCACATTCGTCGGCAAATGGATCTGGTAGACACAAAACTTGTTGATCTTAGAGAAAGTGGCATCAAGAACAAGTCATTCTTGGATGTACACGTGTCATCAATGGGAGATATTGTGACCAATGCAAAAAGGAAATGGCAGGCCTTTTGTGTGCAAGCAGAAAAAGATGCGAAAGACACTGGTGATTATTCTGCCGCAAAACATTGTCGTATGGGGGTGCTAATGCAGAAGAGTGTTAGTACTGCTCAATTGGCTTTCGAACATACGAAGAGGACACGTGAGGCTGTAAATGAGATGGGGACTAAACATATTTCAGCAACAGAATCAATTGTCAGGAATGCTACTGATAACAATGTGCAACATGTCATTGAGATCAATTCTGCACGAGTTGCAGCAGAGGAAGATGTGGCAAAGAACAGTGAGGATCTTCTTGGGCAGTTTGATGTTTTGTCTGCACAAGAGCGAGAGTCCATATCTGGCGTATTAAATGTAGTTGGAACTCATGAAAATACACTTGAGAAGCTACGAGAGGATCACGCTGGCCAAGCTGCTTCCATTGAACACACGGCAAGCGAAACTTTTCAACAGCAGTACAGGGACTATGAACCTAGTGGTACAACACCAATAAGATGTGAGCCTGATGTTCCAACAAAGGGGACAATAGAGTCTCTTCGTTCCTTGCCAATGGAGTCTCTACTTGAGGAATTCCGGGAAAATAATCCATACGAATCTTCTGATGTAAAGGAGTTGAAACCATCGCTCATTCCACGTTCGCCTCTCAGTCAGCTGAACTAA 3027 0.4272 MSGREKEKGVNVQVLLRCRPFSDEELRSNAPQVVTCNEYNREVAVSQSIAGKHIDRVFTFDKVFGPSARQKDLYEQAVTPIVNEVLEGFNCTIFAYGQTGTGKTYTMEGECKKAKSGPRGELPPEAGVIPRAVKQIFDTLESQNAEYSVKVTFLELYNEEITDLLAPEELSKVSLEEKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSSKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIKNKPEVNQKMMKSTLIKDLYGEIERLKAEVYATREKNGIYIPKERYLQEESEKKAMSDQIEQMGVTIETQQKQLEDLQNKYVDQIRQCSDLSNKLDNTEKNLNKTSKVLASTEDELKKCQYTLKEKDFIISEQRKAENALAHQACVLRADLEKALQDNASLFLKIGREDRLNTDNRAVVINFQAELAQQVGSLCNTVTTSLSEQNEHLEGVKKLCHSFLEVHDKAAVDLKKKVTSLRALYISHIEAVQNVVRLHKSSSDATLEELLLAISSNGHSIEEFLASEATEAGSIFDDLQSSLSAQDGELALFARELRNRFSLSLEQIKDISERSQEFVDKLFEESKKLEDFASRADQTQMKSIDEFKKAYEEQSKSDTEKLIADMTNLVSDHIRRQMDLVDTKLVDLRESGIKNKSFLDVHVSSMGDIVTNAKRKWQAFCVQAEKDAKDTGDYSAAKHCRMGVLMQKSVSTAQLAFEHTKRTREAVNEMGTKHISATESIVRNATDNNVQHVIEINSARVAAEEDVAKNSEDLLGQFDVLSAQERESISGVLNVVGTHENTLEKLREDHAGQAASIEHTASETFQQQYRDYEPSGTTPIRCEPDVPTKGTIESLRSLPMESLLEEFRENNPYESSDVKELKPSLIPRSPLSQLN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02538 1008 Pfam Kinesin motor domain 17 358 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 ProSiteProfiles Kinesin motor domain profile. 11 358 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 PANTHER 125 KDA KINESIN-RELATED PROTEIN-LIKE 4 1008 - -
Cca03g02538 1008 SMART kinesin_4 9 366 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 Coils Coil 374 394 - -
Cca03g02538 1008 MobiDBLite consensus disorder prediction 982 1008 - -
Cca03g02538 1008 Coils Coil 418 473 - -
Cca03g02538 1008 CDD KISc_BimC_Eg5 9 367 - -
Cca03g02538 1008 Gene3D Kinesin motor domain 2 389 IPR036961 -
Cca03g02538 1008 PRINTS Kinesin heavy chain signature 88 109 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 PRINTS Kinesin heavy chain signature 225 242 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 PRINTS Kinesin heavy chain signature 259 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 PRINTS Kinesin heavy chain signature 308 329 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02538 1008 PANTHER KINESIN-LIKE PROTEIN KIF11 4 1008 - -
Cca03g02538 1008 ProSitePatterns Kinesin motor domain signature. 258 269 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca03g02538 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 398 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02538 Cca-Chr3 46631217 46637822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02538 11 388 Miscellaneous Gene Families AT5G06670 37.084 5.04e-66 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02538 K10398 - gmx:100800246 1803.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02538 03 46631217 46637822 Cca03g02538 03 46631217 46637822 ECH