Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02536 ATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAGTACATGGACAAGAAGCTTCAGATTAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTTGACCAGTTTATGAATTTGGTTGTTGACAACACTGTGGAAGTGAATGGCAATGAGAAAAATGACATTGGGATGGTGGTAATCAGAGGAAACAGTGTGGTCACTGTTGAAGCGCTTGAACCTGTGAACAGGACTTGA 240 0.4417 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02536 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 1 79 IPR044641 -
Cca03g02536 79 PIRSF Lsm7 5 78 - -
Cca03g02536 79 Gene3D - 1 76 - -
Cca03g02536 79 SMART Sm3 8 72 IPR001163 -
Cca03g02536 79 CDD Sm_G 6 74 IPR034098 GO:0000387|GO:0005681
Cca03g02536 79 Pfam LSM domain 9 71 IPR001163 -
Cca03g02536 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN G 1 79 - -
Cca03g02536 79 SUPERFAMILY Sm-like ribonucleoproteins 9 76 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02536 Cca-Chr3 46615811 46617377 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02536 K11099 - gmx:100305530 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02536 03 46615811 46617377 Cca03g02536 03 46615811 46617377 ECH