Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02535 ATGACGGAAGTGCTTCAGTTGCCTTCATCCTCAAGCTGTTCATGTGGTGGTCTCACACCCAATGATGGGTCGCACCCAAGTCCCCTTATTAACGCTCCCACTGTGGAGCAACAACAAGGGGTGGCAGAGgaagaagaagaagaagaagaagaagaagaagaggaagaaaaagaaAGGGAGAGAGAGAGGGATCAGCTTTCCCTTTTGACCCTTTTGATTGATACTTTCAGGAAGTCTTTGATTGGTTGCAGCACCACCACGCCCGGTGACTTATCTTCTTCTTCTTCTATGGAGATTGGGTGGCCTTCCAATGTCAGACACGTGGCACATGTTACCTTCGATCGATTCCATGGCTTTCTTGGTTTGCCTGTTGAGTTTGAACCTGATGTTCCCAGGAGGCCTCCCAGTGCCAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTTTCTTTTGATGCCAGAGGAAATAGTGTACCTACAATACTGCTCTTAATGCAAAGACATTTGTATGCACAAGGAGGTCTGCAGGCTGAAGGAATCTTCAGAATTAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGAGTAGTACCAAATGGCATTGATGTGCACTGCTTAGCGGGTCTTATAAAGGCTTGGTTCAGAGAACTACCAACTGGGGTATTGGACCCTCTTTCACCAGAGCAGGTGATGCAATCCCAGTCAGAAGAAGAATGTACTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCTTTGCTAGATTGGGCAATAAACTTGATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCGCGTAATATTGCTATGGTTTTTGCACCAAATATGACTCAAATGGCAGATCCTTTGACTGCGTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACTCTTGTTGTGAAGACACTGAGAGAAAGAGAGGAATCTATTGTAAAGTCAAATCCTGTTCCCAACCTTAACTCTTTTGACGATGACGGCCACCATAGCAATTCAGAGATGCTTCACCAGGACGACAGTGAAAATGGAAATGATTGTAATGATGATAATGAGGACACAGTATTTGTCACTGCAGAGCCTTCTCAACAAAGCCCTAGTCATCTTACTGAAGATGGCTGTGAAACTGAATCGAAAACTTTGCCAAAATCCACTGAAAATTTTATTTCTAGTGGAAATAGGTTGCTGCTTGACAGTTGTCCTTGCAATCTCGTATCTCAAATTTGCTCTTTAGCAATTGGACTTCAAGACTGCAGCCTCGCTACCACGCCGACAAAGGGGGTTCAAGCAAGAATTTGCCGGAGCAAAAGCCTTCAGTTGAGTACTTATGATACTGACAAGTGTTCTAGAAAGGTGATCGAGCTTCCAGTAGTAGGAGCTGCAGAGAAGAACCGAGGAACTGCAATTATTGGGCGTATAAATTCGAGAACCGAGTTGGCTGAAGCTTGGCGTTGA 1503 0.4311 MTEVLQLPSSSSCSCGGLTPNDGSHPSPLINAPTVEQQQGVAEEEEEEEEEEEEEEKERERERDQLSLLTLLIDTFRKSLIGCSTTTPGDLSSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPDVPRRPPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGVVPNGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECTQLVRLLPPTEAALLDWAINLMADVAQMENLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVVKTLREREESIVKSNPVPNLNSFDDDGHHSNSEMLHQDDSENGNDCNDDNEDTVFVTAEPSQQSPSHLTEDGCETESKTLPKSTENFISSGNRLLLDSCPCNLVSQICSLAIGLQDCSLATTPTKGVQARICRSKSLQLSTYDTDKCSRKVIELPVVGAAEKNRGTAIIGRINSRTELAEAWR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02535 500 MobiDBLite consensus disorder prediction 343 360 - -
Cca03g02535 500 MobiDBLite consensus disorder prediction 366 387 - -
Cca03g02535 500 Pfam P21-Rho-binding domain 98 125 IPR000095 -
Cca03g02535 500 ProSiteProfiles CRIB domain profile. 99 112 IPR000095 -
Cca03g02535 500 MobiDBLite consensus disorder prediction 329 396 - -
Cca03g02535 500 MobiDBLite consensus disorder prediction 1 38 - -
Cca03g02535 500 PANTHER MKIAA1688 PROTEIN 1 500 IPR044785 GO:0005096
Cca03g02535 500 Gene3D CRIB domain 93 128 IPR036936 -
Cca03g02535 500 Pfam RhoGAP domain 161 295 IPR000198 GO:0007165
Cca03g02535 500 MobiDBLite consensus disorder prediction 1 63 - -
Cca03g02535 500 Gene3D Rho GTPase activation protein 132 330 IPR008936 GO:0007165
Cca03g02535 500 ProSiteProfiles Rho GTPase-activating proteins domain profile. 144 329 IPR000198 GO:0007165
Cca03g02535 500 SMART RhoGAP_3 158 321 IPR000198 GO:0007165
Cca03g02535 500 MobiDBLite consensus disorder prediction 40 58 - -
Cca03g02535 500 CDD RhoGAP 161 316 - -
Cca03g02535 500 SUPERFAMILY GTPase activation domain, GAP 139 317 IPR008936 GO:0007165
Cca03g02535 500 SMART PBD_5 99 133 IPR000095 -
Cca03g02535 500 Coils Coil 34 69 - -
Cca03g02535 500 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 1 500 - -
Cca03g02535 500 CDD CRIB 97 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02535 Cca-Chr3 46604606 46608689 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02535 - - gmx:100783118 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02535 03 46604606 46608689 Cca03g02535 03 46604606 46608689 ECH