Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02534 ATGGACGCTGTAGCATGCTCCCGCCATTtctccactctctccctttctctctctcACAATCGAACCTTTCACTCTTCTTCTGCCAAATCAATCAAGCTTTCTTCTACTTCCACCACTGCTTCCCTATCCTCCAGAAACTTGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCCAAGGGCGTGGCTGTGAGAAGGGACACGCGCGGAGTGGTGGTGAGGGCCGAAATGTTCGGCCAATTGACCAATGGCCTTGAGACTGCATGGAACAAGCTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTCTAGAAGCTGATGTTAGTCTTCCTGTTGTGAGGAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGAGTTGGTGTCATTCGAGGAGTCAGACCAGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTTCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAAACAACTGTTTGTGCAAAGTTGGCAAATTACCTCAAGAAACAGGGGAAAAGTTGCATGCTAGTTGCTGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTGCTATTTTGGGAAAACAGGTGGATGTGGCTGTCTATACAGCAGGTACCGATGTTAAACCTTCAGAAATTGCCAAACAAGGTTTGGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACTGCTGGTAGGCTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTGAAACGGGCATTGAATCCAACAGAAGTTTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCCGCAGCGTTGGTGACTACTTTCAATCTTGAGATTGGAATTACTGGTGCCATCTTGACAAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAACTAGTAGGACGAGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGCATACTAGGAATGGGAGATGTTCTTTCCTTTGTAGAGAAGGCACAAGAAGTTATGCGTCAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAACGATTTTCTAAAGCAAACCCGTACAGTTGCAAAAATGGGTTCTGTGTCTCGTGTCATTGGAATGATTCCTGGAATGGGGAAGATTACTCCTGCTCAAATTCGAGACGCAGAGAAGAATTTGCAGAATATGGAAGTGATGATAGAAGCAATGACCCCTGAGGAGAGGGAAAAGCCAGAACTGTTGGCAGAATCACCTATTAGGAGGAAAAGGGTTGCTCAGGATTCAGGGAAAACTGAACAGCAGGTAAGCCAACTTGTAGCTCAACTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGCAATCTTGAGGAAGCGCTTAAAGCTGAGGAAAAGGCACCACCTGGCACTGCAAGGAGGAGGAAGAGATCGGAATCACGGAGTCCATTTGCCGACTCAACGCCAGCAAGGCCTACTCCTCGAGGTTTTGGGAGTAAAAATTGA 1692 0.4492 MDAVACSRHFSTLSLSLSHNRTFHSSSAKSIKLSSTSTTASLSSRNLFAKEVWGWVNSKGVAVRRDTRGVVVRAEMFGQLTNGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVQLMGGEVSELVFSKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVAVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKITPAQIRDAEKNLQNMEVMIEAMTPEEREKPELLAESPIRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSPFADSTPARPTPRGFGSKN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02534 563 SUPERFAMILY Signal peptide-binding domain 401 502 IPR036891 GO:0006614|GO:0008312|GO:0048500
Cca03g02534 563 PANTHER BNAC02G02820D PROTEIN 51 563 - -
Cca03g02534 563 MobiDBLite consensus disorder prediction 458 486 - -
Cca03g02534 563 MobiDBLite consensus disorder prediction 521 544 - -
Cca03g02534 563 TIGRFAM ffh: signal recognition particle protein 78 502 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Cca03g02534 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 428 IPR027417 -
Cca03g02534 563 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 343 356 IPR000897 GO:0005525|GO:0006614
Cca03g02534 563 Gene3D - 79 380 IPR042101 -
Cca03g02534 563 Pfam Signal peptide binding domain 401 499 IPR004125 GO:0006614|GO:0008312|GO:0048500
Cca03g02534 563 Gene3D - 165 359 IPR027417 -
Cca03g02534 563 MobiDBLite consensus disorder prediction 458 480 - -
Cca03g02534 563 Gene3D - 381 505 IPR036891 GO:0006614|GO:0008312|GO:0048500
Cca03g02534 563 SMART SRP54_3 175 370 IPR000897 GO:0005525|GO:0006614
Cca03g02534 563 SMART SRP54_N_2 76 161 IPR013822 GO:0005525|GO:0006614
Cca03g02534 563 Hamap Signal recognition particle 54 kDa protein [srp54]. 80 520 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Cca03g02534 563 SMART AAA_5 174 321 IPR003593 -
Cca03g02534 563 CDD SRP_G 176 368 - -
Cca03g02534 563 Pfam SRP54-type protein, GTPase domain 175 370 IPR000897 GO:0005525|GO:0006614
Cca03g02534 563 MobiDBLite consensus disorder prediction 518 563 - -
Cca03g02534 563 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 51 563 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Cca03g02534 563 Pfam SRP54-type protein, helical bundle domain 80 157 IPR013822 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02534 Cca-Chr3 46595549 46603131 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02534 K03106 - gmx:100782581 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02534 03 46595549 46603131 Cca03g02534 03 46595549 46603131 ECH